Wdr45b (WD repeat domain 45B) - Rat Genome Database

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Gene: Wdr45b (WD repeat domain 45B) Chinchilla lanigera
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Symbol: Wdr45b
Name: WD repeat domain 45B
RGD ID: 8969247
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); TSC1-TSC2 complex binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Neurodevelopmental Disorder with Spastic Quadriplegia and Brain Abnormalities with or without Seizures (ortholog); FOUND IN lysosome (ortholog); phagophore assembly site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: WD repeat domain phosphoinositide-interacting protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506515,327 - 560,075 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506515,364 - 556,507 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Wdr45b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506515,327 - 560,075 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506515,364 - 556,507 (+)NCBIChiLan1.0ChiLan1.0
WDR45B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1782,614,562 - 82,648,553 (-)EnsemblGRCh38hg38GRCh38
GRCh381782,614,562 - 82,648,530 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371780,572,438 - 80,606,320 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361778,165,727 - 78,199,700 (-)NCBINCBI36hg18NCBI36
Build 341778,165,741 - 78,199,566NCBI
Celera1777,166,614 - 77,200,663 (-)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1775,972,711 - 76,006,590 (-)NCBIHuRef
CHM1_11780,658,534 - 80,692,618 (-)NCBICHM1_1
Wdr45b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,218,029 - 121,246,393 (-)NCBIGRCm39mm39
GRCm39 Ensembl11121,218,050 - 121,245,271 (-)Ensembl
GRCm3811121,327,203 - 121,354,447 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,327,224 - 121,354,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711121,188,517 - 121,215,761 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611121,143,324 - 121,170,499 (-)NCBImm8
Celera11133,064,698 - 133,091,913 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.24NCBI
Wdr45b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210106,597,558 - 106,629,488 (-)NCBI
Rnor_6.0 Ensembl10110,525,749 - 110,555,761 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010110,523,843 - 110,555,769 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010110,109,737 - 110,141,339 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,558,417 - 110,588,534 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110110,573,975 - 110,603,038 (-)NCBI
Celera10105,135,955 - 105,167,805 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
WDR45B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,829,546 - 82,859,600 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,829,546 - 82,863,803 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01777,028,543 - 77,058,075 (-)NCBIMhudiblu_PPA_v0panPan3
WDR45B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9384,657 - 425,757 (+)NCBI
ROS_Cfam_1.09376,461 - 417,524 (+)NCBI
UMICH_Zoey_3.19370,549 - 411,627 (+)NCBI
UNSW_CanFamBas_1.09531,795 - 572,847 (+)NCBI
UU_Cfam_GSD_1.09607,084 - 648,162 (+)NCBI
Wdr45b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602377,462 - 396,576 (+)NCBI
SpeTri2.0NW_004936923173,515 - 192,616 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR45B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12492,594 - 549,158 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112522,762 - 547,333 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212190,371 - 215,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR45B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,514,729 - 74,549,860 (-)NCBI
ChlSab1.1 Ensembl1674,512,231 - 74,550,105 (-)Ensembl
Vero_WHO_p1.0NW_02366607746,159,752 - 46,189,726 (-)NCBI
Wdr45b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480111,322,159 - 11,351,720 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019991   ⟹   ENSCLAP00000019798
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955506515,327 - 560,075 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000019992   ⟹   ENSCLAP00000019799
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955506515,513 - 551,401 (+)Ensembl
RefSeq Acc Id: XM_005407188   ⟹   XP_005407245
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955506515,364 - 556,507 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407245 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005407245   ⟸   XM_005407188
- Sequence:
RefSeq Acc Id: ENSCLAP00000019799   ⟸   ENSCLAT00000019992
RefSeq Acc Id: ENSCLAP00000019798   ⟸   ENSCLAT00000019991


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013572 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000019798 ENTREZGENE
Ensembl Transcript ENSCLAT00000019991 ENTREZGENE
NCBI Gene Wdr45b ENTREZGENE