Ovol1 (ovo like transcriptional repressor 1) - Rat Genome Database

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Gene: Ovol1 (ovo like transcriptional repressor 1) Chinchilla lanigera
Analyze
Symbol: Ovol1
Name: ovo like transcriptional repressor 1
RGD ID: 8969148
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN epidermis development (ortholog); germline cell cycle switching, mitotic to meiotic cell cycle (ortholog); kidney development (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); familial temporal lobe epilepsy 8 (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ovo-like 1(Drosophila); ovo-like zinc finger 1; putative transcription factor Ovo-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,522,384 - 19,534,450 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,524,420 - 19,528,938 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Ovol1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,522,384 - 19,534,450 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,524,420 - 19,528,938 (-)NCBIChiLan1.0ChiLan1.0
OVOL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,787,063 - 65,797,214 (+)EnsemblGRCh38hg38GRCh38
GRCh381165,787,063 - 65,797,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371165,554,534 - 65,564,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,311,105 - 65,321,261 (+)NCBINCBI36hg18NCBI36
Build 341165,311,104 - 65,321,259NCBI
Celera1162,885,403 - 62,888,586 (+)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,863,298 - 61,891,453 (+)NCBIHuRef
CHM1_11165,438,395 - 65,448,582 (+)NCBICHM1_1
Ovol1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,599,165 - 5,610,603 (-)NCBIGRCm39mm39
GRCm39 Ensembl195,599,164 - 5,610,674 (-)Ensembl
GRCm38195,549,137 - 5,560,575 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,549,136 - 5,560,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,549,137 - 5,560,575 (-)NCBIGRCm37mm9NCBIm37
MGSCv36195,549,137 - 5,560,575 (-)NCBImm8
Celera195,420,389 - 5,431,822 (-)NCBICelera
Cytogenetic Map19ANCBI
Ovol1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,855,261 - 202,868,858 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1202,855,265 - 202,866,831 (-)Ensembl
Rnor_6.01220,927,309 - 220,938,814 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,925,605 - 220,938,814 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,857,053 - 227,870,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,192,952 - 208,204,453 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11208,348,281 - 208,359,704 (-)NCBI
Celera1200,391,028 - 200,402,529 (-)NCBICelera
Cytogenetic Map1q43NCBI
OVOL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11164,478,374 - 64,488,647 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,478,549 - 64,488,647 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01161,144,969 - 61,156,706 (+)NCBIMhudiblu_PPA_v0panPan3
OVOL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,454,170 - 51,465,189 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,455,107 - 51,464,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,061,870 - 50,073,650 (-)NCBI
ROS_Cfam_1.01852,491,190 - 52,502,975 (-)NCBI
UMICH_Zoey_3.11851,591,003 - 51,602,783 (-)NCBI
UNSW_CanFamBas_1.01851,165,636 - 51,177,417 (-)NCBI
UU_Cfam_GSD_1.01851,954,801 - 51,966,586 (-)NCBI
Ovol1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,289,360 - 7,300,392 (-)NCBI
SpeTri2.0NW_0049365993,732,335 - 3,742,749 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OVOL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,526,668 - 6,538,921 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,526,679 - 6,538,992 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,630,709 - 5,642,659 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OVOL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118,470,065 - 8,480,406 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl18,470,029 - 8,478,626 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038105,755,984 - 105,766,125 (-)NCBIVero_WHO_p1.0
Ovol1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476720,624,325 - 20,636,015 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000024163   ⟹   ENSCLAP00000023935
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542219,522,384 - 19,534,450 (-)Ensembl
RefSeq Acc Id: XM_013513853   ⟹   XP_013369307
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542219,524,420 - 19,528,938 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369307 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013369307   ⟸   XM_013513853
- Sequence:
RefSeq Acc Id: ENSCLAP00000023935   ⟸   ENSCLAT00000024163


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016426 Ensembl
NCBI Gene Ovol1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ovol1  ovo like transcriptional repressor 1    ovo-like zinc finger 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Ovol1  ovo-like zinc finger 1    ovo-like 1(Drosophila)  Symbol and/or name change 5135510 APPROVED