Rnf19b (ring finger protein 19B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rnf19b (ring finger protein 19B) Chinchilla lanigera
Analyze
Symbol: Rnf19b
Name: ring finger protein 19B
RGD ID: 8967249
Description: ENCODES a protein that exhibits ubiquitin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytolytic granule (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase RNF19B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545211,179,603 - 11,190,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545211,179,268 - 11,190,594 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rnf19b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545211,179,603 - 11,190,593 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545211,179,268 - 11,190,594 (-)NCBIChiLan1.0ChiLan1.0
RNF19B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38132,929,036 - 32,964,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl132,936,445 - 32,964,809 (-)EnsemblGRCh38hg38GRCh38
GRCh37133,402,050 - 33,430,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36133,174,634 - 33,202,301 (-)NCBINCBI36Build 36hg18NCBI36
Build 34133,071,139 - 33,098,807NCBI
Celera131,670,681 - 31,698,914 (-)NCBICelera
Cytogenetic Map1p35.1NCBI
HuRef131,517,104 - 31,545,246 (-)NCBIHuRef
CHM1_1133,517,458 - 33,545,666 (-)NCBICHM1_1
T2T-CHM13v2.0132,788,820 - 32,824,591 (-)NCBIT2T-CHM13v2.0
Rnf19b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394128,951,871 - 128,978,319 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4128,952,064 - 128,979,679 (+)EnsemblGRCm39 Ensembl
GRCm384129,058,144 - 129,084,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4129,058,271 - 129,085,886 (+)EnsemblGRCm38mm10GRCm38
MGSCv374128,735,515 - 128,761,770 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364128,560,255 - 128,586,830 (+)NCBIMGSCv36mm8
Celera4127,398,758 - 127,424,783 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map462.76NCBI
Rnf19b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85146,690,453 - 146,715,729 (+)NCBIGRCr8
mRatBN7.25141,406,085 - 141,431,376 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5141,406,118 - 141,431,380 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5144,104,510 - 144,128,236 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05145,874,334 - 145,898,060 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05145,873,904 - 145,897,853 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05147,246,032 - 147,270,892 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5147,246,037 - 147,270,957 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05150,992,439 - 151,005,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45148,230,183 - 148,243,398 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15148,228,532 - 148,252,082 (+)NCBI
Celera5139,898,818 - 139,911,799 (+)NCBICelera
Cytogenetic Map5q36NCBI
RNF19B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21193,855,997 - 193,884,591 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11192,978,283 - 193,006,811 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0132,228,220 - 32,256,745 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1133,414,247 - 33,441,955 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl133,414,611 - 33,441,986 (-)Ensemblpanpan1.1panPan2
RNF19B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1268,413,020 - 68,435,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl268,413,108 - 68,434,526 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha264,992,543 - 65,015,144 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0268,977,747 - 69,000,362 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl268,977,605 - 68,998,618 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1265,789,333 - 65,811,924 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0266,811,845 - 66,834,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,803,627 - 67,826,221 (+)NCBIUU_Cfam_GSD_1.0
Rnf19b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505850,001,647 - 50,024,844 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647415,827,303 - 15,849,632 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647415,827,800 - 15,850,405 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF19B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl689,220,724 - 89,250,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1689,220,156 - 89,250,358 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2683,251,434 - 83,277,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNF19B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12099,906,059 - 99,932,570 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603316,759,810 - 16,791,208 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf19b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476416,025,741 - 16,047,966 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476416,025,398 - 16,048,151 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013450   ⟹   ENSCLAP00000013298
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545211,179,603 - 11,190,593 (-)Ensembl
RefSeq Acc Id: XM_013519574   ⟹   XP_013375028
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545211,179,268 - 11,190,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519575   ⟹   XP_013375029
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545211,179,268 - 11,190,594 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375028 (Get FASTA)   NCBI Sequence Viewer  
  XP_013375029 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013298
  ENSCLAP00000013298.1
Reference Protein Sequences
RefSeq Acc Id: XP_013375029   ⟸   XM_013519575
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013375028   ⟸   XM_013519574
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000013298   ⟸   ENSCLAT00000013450
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009186 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013450 ENTREZGENE
  ENSCLAT00000013450.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
InterPro E3_UB_ligase_RBR UniProtKB/TrEMBL
  IBR_dom UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
NCBI Gene Rnf19b ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF19B UniProtKB/TrEMBL
  PTHR11685 UniProtKB/TrEMBL
Pfam IBR UniProtKB/TrEMBL
PROSITE TRIAD UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8C2YPA3_CHILA UniProtKB/TrEMBL