Ablim2 (actin binding LIM protein family member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ablim2 (actin binding LIM protein family member 2) Chinchilla lanigera
Analyze
Symbol: Ablim2
Name: actin binding LIM protein family member 2
RGD ID: 8966553
Description: INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); High Myopia (ortholog); FOUND IN actin cytoskeleton (ortholog); myofibril (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: actin binding LIM protein family, member 2; actin-binding LIM protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,800,758 - 2,920,926 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ablim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,800,758 - 2,920,926 (+)NCBIChiLan1.0ChiLan1.0
ABLIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3847,965,327 - 8,158,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl47,965,310 - 8,158,832 (-)EnsemblGRCh38hg38GRCh38
GRCh3747,967,054 - 8,160,540 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,017,938 - 8,211,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 3448,085,111 - 8,278,609NCBI
Celera47,868,198 - 8,052,469 (-)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef47,888,374 - 8,079,979 (-)NCBIHuRef
CHM1_147,965,064 - 8,158,514 (-)NCBICHM1_1
T2T-CHM13v2.047,943,879 - 8,137,197 (-)NCBIT2T-CHM13v2.0
Ablim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,915,200 - 36,042,323 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,915,224 - 36,042,317 (+)EnsemblGRCm39 Ensembl
GRCm38535,757,855 - 35,884,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,757,880 - 35,884,973 (+)EnsemblGRCm38mm10GRCm38
MGSCv37536,100,529 - 36,227,628 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,074,792 - 36,201,831 (+)NCBIMGSCv36mm8
Celera533,231,426 - 33,358,448 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map518.75NCBI
Ablim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,090,046 - 79,214,986 (-)NCBIGRCr8
mRatBN7.21474,865,409 - 74,990,334 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1474,866,281 - 74,990,334 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,307,813 - 79,431,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,548,687 - 80,672,784 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01476,993,677 - 77,117,778 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,044,217 - 80,169,491 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,675,672 - 79,799,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,499,878 - 80,624,108 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,502,268 - 80,626,499 (-)NCBI
Celera1473,798,130 - 73,922,188 (-)NCBICelera
Cytogenetic Map14q21NCBI
ABLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,247,435 - 8,445,155 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,175,443 - 8,372,335 (-)NCBINHGRI_mPanPan1
PanPan1.148,029,394 - 8,225,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,031,074 - 8,224,912 (-)Ensemblpanpan1.1panPan2
ABLIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,838,929 - 59,980,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl359,838,934 - 59,986,723 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,487,740 - 62,629,499 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,311,073 - 60,453,659 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,311,076 - 60,453,669 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,807,453 - 59,949,385 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,009,926 - 60,152,407 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,368,560 - 60,510,409 (-)NCBIUU_Cfam_GSD_1.0
Ablim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,725,286 - 65,860,955 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,428,475 - 19,562,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,426,962 - 19,562,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,916,775 - 3,054,969 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,948,948 - 3,054,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,172,649 - 4,301,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12743,916,680 - 44,108,157 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666051234,454 - 430,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ablim2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,779,278 - 23,891,360 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,778,298 - 23,891,476 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005408783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01067089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01067090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDJ01123377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000012827   ⟹   ENSCLAP00000012679
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012828   ⟹   ENSCLAP00000012680
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012829   ⟹   ENSCLAP00000012681
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012830   ⟹   ENSCLAP00000012682
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012831   ⟹   ENSCLAP00000012683
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555142,859,747 - 2,919,978 (+)Ensembl
RefSeq Acc Id: XM_005408783   ⟹   XP_005408840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,822,004 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408784   ⟹   XP_005408841
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,800,758 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408785   ⟹   XP_005408842
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,147 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408786   ⟹   XP_005408843
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,147 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408787   ⟹   XP_005408844
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,146 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408789   ⟹   XP_005408846
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506772   ⟹   XP_013362226
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506773   ⟹   XP_013362227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506774   ⟹   XP_013362228
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506775   ⟹   XP_013362229
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506776   ⟹   XP_013362230
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506778   ⟹   XP_013362232
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506779   ⟹   XP_013362233
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506780   ⟹   XP_013362234
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506781   ⟹   XP_013362235
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506782   ⟹   XP_013362236
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,140 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506783   ⟹   XP_013362237
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555142,803,148 - 2,920,926 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005408841   ⟸   XM_005408784
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408842   ⟸   XM_005408785
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408843   ⟸   XM_005408786
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408844   ⟸   XM_005408787
- Peptide Label: isoform X11
- UniProtKB: A0A8C2VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408846   ⟸   XM_005408789
- Peptide Label: isoform X14
- UniProtKB: A0A8C2VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005408840   ⟸   XM_005408783
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362226   ⟸   XM_013506772
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362230   ⟸   XM_013506776
- Peptide Label: isoform X9
- UniProtKB: A0A8C2VAG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362228   ⟸   XM_013506774
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VCN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362234   ⟸   XM_013506780
- Peptide Label: isoform X13
- UniProtKB: A0A8C2VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362235   ⟸   XM_013506781
- Peptide Label: isoform X15
- UniProtKB: A0A8C2VCN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362227   ⟸   XM_013506773
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362232   ⟸   XM_013506778
- Peptide Label: isoform X10
- UniProtKB: A0A8C2VCN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362229   ⟸   XM_013506775
- Peptide Label: isoform X8
- UniProtKB: A0A8C2VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362233   ⟸   XM_013506779
- Peptide Label: isoform X12
- UniProtKB: A0A8C2VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362236   ⟸   XM_013506782
- Peptide Label: isoform X16
- UniProtKB: A0A8C2VAG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362237   ⟸   XM_013506783
- Peptide Label: isoform X17
- UniProtKB: A0A8C2VGT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012680   ⟸   ENSCLAT00000012828
RefSeq Acc Id: ENSCLAP00000012679   ⟸   ENSCLAT00000012827
RefSeq Acc Id: ENSCLAP00000012681   ⟸   ENSCLAT00000012829
RefSeq Acc Id: ENSCLAP00000012683   ⟸   ENSCLAT00000012831
RefSeq Acc Id: ENSCLAP00000012682   ⟸   ENSCLAT00000012830
Protein Domains
HP   LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008762 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012827 ENTREZGENE
  ENSCLAT00000012827.1 UniProtKB/TrEMBL
  ENSCLAT00000012828 ENTREZGENE
  ENSCLAT00000012828.1 UniProtKB/TrEMBL
  ENSCLAT00000012829 ENTREZGENE
  ENSCLAT00000012829.1 UniProtKB/TrEMBL
  ENSCLAT00000012830 ENTREZGENE
  ENSCLAT00000012830.1 UniProtKB/TrEMBL
  ENSCLAT00000012831.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
  Cysteine Rich Protein UniProtKB/TrEMBL
InterPro AbLIM_anchor UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Ablim2 ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/TrEMBL
  PTHR24213:SF6 UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS51089 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF47050 UniProtKB/TrEMBL
UniProt A0A8C2VAG6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VAH8_CHILA UniProtKB/TrEMBL
  A0A8C2VCN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VFP8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VGT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ablim2  actin binding LIM protein family member 2    actin binding LIM protein family, member 2  Symbol and/or name change 5135510 APPROVED