Smpdl3a (sphingomyelin phosphodiesterase acid like 3A) - Rat Genome Database

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Gene: Smpdl3a (sphingomyelin phosphodiesterase acid like 3A) Chinchilla lanigera
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Symbol: Smpdl3a
Name: sphingomyelin phosphodiesterase acid like 3A
RGD ID: 8965033
Description: ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN nucleoside triphosphate catabolic process (ortholog); sphingomyelin catabolic process (ortholog); ASSOCIATED WITH endometriosis (ortholog); visual epilepsy (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acid sphingomyelinase-like phosphodiesterase 3a; sphingomyelin phosphodiesterase, acid-like 3A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,655,732 - 4,663,638 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,655,730 - 4,663,993 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Smpdl3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554364,655,732 - 4,663,638 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554364,655,730 - 4,663,993 (+)NCBIChiLan1.0ChiLan1.0
SMPDL3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386122,789,258 - 122,809,720 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6122,789,049 - 122,809,720 (+)EnsemblGRCh38hg38GRCh38
GRCh376123,110,403 - 123,130,865 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366123,152,123 - 123,172,564 (+)NCBINCBI36hg18NCBI36
Build 346123,152,122 - 123,172,561NCBI
Celera6123,854,285 - 123,875,174 (+)NCBI
Cytogenetic Map6q22.31NCBI
HuRef6120,686,989 - 120,707,854 (+)NCBIHuRef
CHM1_16123,373,788 - 123,394,652 (+)NCBICHM1_1
T2T-CHM13v2.06123,977,551 - 123,998,013 (+)NCBI
Smpdl3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391057,670,640 - 57,687,926 (+)NCBIGRCm39mm39
GRCm39 Ensembl1057,670,431 - 57,687,926 (+)Ensembl
GRCm381057,794,544 - 57,811,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1057,794,335 - 57,811,830 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,514,350 - 57,531,636 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,483,015 - 57,500,236 (+)NCBImm8
Celera1058,611,953 - 58,629,235 (+)NCBICelera
Cytogenetic Map10B4NCBI
Smpdl3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22037,132,592 - 37,155,567 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2037,132,592 - 37,155,567 (+)Ensembl
Rnor_6.02040,779,022 - 40,800,842 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2040,778,927 - 40,800,868 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02042,510,561 - 42,532,381 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42036,821,916 - 36,844,891 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12036,835,715 - 36,858,691 (+)NCBI
Celera2038,445,334 - 38,468,295 (+)NCBICelera
Cytogenetic Map20q12NCBI
SMPDL3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16124,701,094 - 124,723,469 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6124,701,089 - 124,726,484 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06120,577,885 - 120,600,371 (+)NCBIMhudiblu_PPA_v0panPan3
SMPDL3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1162,091,947 - 62,110,081 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl162,092,121 - 62,109,773 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,901,586 - 62,919,687 (+)NCBI
ROS_Cfam_1.0162,296,228 - 62,314,394 (+)NCBI
ROS_Cfam_1.0 Ensembl162,171,111 - 62,314,381 (+)Ensembl
UMICH_Zoey_3.1162,230,501 - 62,248,649 (+)NCBI
UNSW_CanFamBas_1.0162,018,563 - 62,036,619 (+)NCBI
UU_Cfam_GSD_1.0162,666,962 - 62,685,313 (+)NCBI
Smpdl3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946112,987,002 - 113,004,982 (+)NCBI
SpeTri2.0NW_0049368021,070,919 - 1,089,222 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMPDL3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl139,848,641 - 39,868,731 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1139,848,641 - 39,869,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2144,076,443 - 44,094,659 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMPDL3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11350,996,472 - 51,017,056 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1350,996,674 - 51,016,108 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604023,291,116 - 23,312,930 (-)NCBIVero_WHO_p1.0
Smpdl3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247988,409,960 - 8,418,575 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247988,410,048 - 8,422,900 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019136   ⟹   ENSCLAP00000018951
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554364,655,732 - 4,663,638 (+)Ensembl
RefSeq Acc Id: XM_005389295   ⟹   XP_005389352
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554364,655,730 - 4,663,993 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389352 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005389352   ⟸   XM_005389295
- Sequence:
RefSeq Acc Id: ENSCLAP00000018951   ⟸   ENSCLAT00000019136


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012977 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000018951 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019136 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Smpdl3a ENTREZGENE
UniProt A0A8C2VQ13_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Smpdl3a  sphingomyelin phosphodiesterase acid like 3A    sphingomyelin phosphodiesterase, acid-like 3A  Symbol and/or name change 5135510 APPROVED