Tm7sf3 (transmembrane 7 superfamily member 3) - Rat Genome Database

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Gene: Tm7sf3 (transmembrane 7 superfamily member 3) Chinchilla lanigera
Analyze
Symbol: Tm7sf3
Name: transmembrane 7 superfamily member 3
RGD ID: 8964024
Description: INVOLVED IN cellular response to unfolded protein (ortholog); negative regulation of programmed cell death (ortholog); positive regulation of insulin secretion (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541321,844,333 - 21,890,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541321,847,695 - 21,890,449 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Tm7sf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541321,844,333 - 21,890,449 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541321,847,695 - 21,890,449 (-)NCBIChiLan1.0ChiLan1.0
TM7SF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381226,971,579 - 27,014,384 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1226,971,579 - 27,014,434 (-)EnsemblGRCh38hg38GRCh38
GRCh371227,124,512 - 27,167,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361227,017,390 - 27,058,405 (-)NCBINCBI36Build 36hg18NCBI36
Build 341227,017,389 - 27,058,405NCBI
Celera1232,270,664 - 32,313,491 (-)NCBICelera
Cytogenetic Map12p11.23NCBI
HuRef1226,894,572 - 26,937,397 (-)NCBIHuRef
CHM1_11227,089,555 - 27,132,353 (-)NCBICHM1_1
T2T-CHM13v2.01226,843,586 - 26,886,386 (-)NCBIT2T-CHM13v2.0
Tm7sf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396146,503,774 - 146,536,103 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6146,503,850 - 146,544,322 (-)EnsemblGRCm39 Ensembl
GRCm386146,602,276 - 146,634,605 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6146,602,352 - 146,642,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv376146,550,798 - 146,583,114 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366146,560,774 - 146,591,710 (-)NCBIMGSCv36mm8
Celera6149,654,685 - 149,686,318 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map677.7NCBI
Tm7sf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84181,248,819 - 181,280,844 (-)NCBIGRCr8
mRatBN7.24179,518,127 - 179,550,154 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4179,518,130 - 179,550,154 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4185,803,652 - 185,835,494 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04181,588,173 - 181,620,014 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04180,208,591 - 180,240,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04180,913,703 - 180,951,564 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4180,913,706 - 180,951,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04245,073,410 - 245,110,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44184,180,210 - 184,212,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14184,425,335 - 184,457,993 (-)NCBI
Celera4168,014,719 - 168,046,584 (-)NCBICelera
Cytogenetic Map4q44NCBI
TM7SF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21069,801,352 - 69,843,920 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11269,797,805 - 69,838,229 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01259,298,725 - 59,340,896 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11261,913,370 - 61,955,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1261,913,370 - 61,955,540 (+)Ensemblpanpan1.1panPan2
TM7SF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12720,615,054 - 20,665,596 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2720,627,120 - 20,664,089 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2725,722,877 - 25,773,395 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02720,810,022 - 20,860,318 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2720,822,517 - 20,860,186 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12720,620,956 - 20,671,207 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02720,643,189 - 20,693,494 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02725,885,763 - 25,923,519 (-)NCBIUU_Cfam_GSD_1.0
Tm7sf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494582,553,901 - 82,591,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936548476,574 - 516,692 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936548476,785 - 514,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TM7SF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl546,740,949 - 46,784,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1546,740,936 - 46,784,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2550,292,383 - 50,334,707 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TM7SF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11126,723,505 - 26,764,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1126,723,834 - 26,764,877 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660698,302,899 - 8,352,404 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tm7sf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475212,185,548 - 12,223,479 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475212,185,913 - 12,223,002 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025058   ⟹   ENSCLAP00000024818
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541321,844,333 - 21,890,449 (-)Ensembl
RefSeq Acc Id: XM_005379116   ⟹   XP_005379173
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541321,847,695 - 21,890,449 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379117   ⟹   XP_005379174
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541321,848,950 - 21,890,449 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379173 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379174 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024818
  ENSCLAP00000024818.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379173   ⟸   XM_005379116
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005379174   ⟸   XM_005379117
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W6M5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000024818   ⟸   ENSCLAT00000025058
Protein Domains
DUF4203


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025058 ENTREZGENE
  ENSCLAT00000025058.1 UniProtKB/TrEMBL
InterPro DUF4203 UniProtKB/TrEMBL
  TM7SF3 UniProtKB/TrEMBL
NCBI Gene Tm7sf3 ENTREZGENE
PANTHER PTHR15937 UniProtKB/TrEMBL
  TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 UniProtKB/TrEMBL
Pfam DUF4203 UniProtKB/TrEMBL
UniProt A0A8C2W6M5 ENTREZGENE, UniProtKB/TrEMBL