Dpep1 (dipeptidase 1) - Rat Genome Database

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Gene: Dpep1 (dipeptidase 1) Chinchilla lanigera
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Symbol: Dpep1
Name: dipeptidase 1
RGD ID: 8963272
Description: ENCODES a protein that exhibits beta-lactamase activity (ortholog); cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); dipeptidase activity (ortholog); INVOLVED IN antibiotic metabolic process (ortholog); cellular response to calcium ion (ortholog); cellular response to insulin stimulus (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 4 (ortholog); Chemically-Induced Disorders (ortholog); Fanconi anemia (ortholog); FOUND IN apical part of cell (ortholog); cell junction (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dipeptidase 1 (renal)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,204,055 - 3,215,565 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,204,421 - 3,215,514 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dpep1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555413,204,055 - 3,215,565 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555413,204,421 - 3,215,514 (+)NCBIChiLan1.0ChiLan1.0
DPEP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381689,613,308 - 89,641,540 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1689,613,308 - 89,638,456 (+)EnsemblGRCh38hg38GRCh38
GRCh371689,679,716 - 89,707,948 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361688,214,501 - 88,232,338 (+)NCBINCBI36Build 36hg18NCBI36
Build 341688,214,500 - 88,232,338NCBI
Celera1674,743,127 - 74,769,330 (+)NCBICelera
Cytogenetic Map16q24.3NCBI
HuRef1675,374,386 - 75,400,655 (+)NCBIHuRef
CHM1_11691,091,422 - 91,116,106 (+)NCBICHM1_1
T2T-CHM13v2.01695,694,848 - 95,725,329 (+)NCBIT2T-CHM13v2.0
Dpep1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,913,069 - 123,928,551 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,912,981 - 123,928,551 (+)EnsemblGRCm39 Ensembl
GRCm388123,186,235 - 123,201,812 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8123,186,242 - 123,201,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv378125,710,135 - 125,725,712 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368126,072,332 - 126,087,314 (+)NCBIMGSCv36mm8
Celera8127,417,731 - 127,433,354 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map872.08NCBI
Dpep1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,118,270 - 68,143,781 (+)NCBIGRCr8
mRatBN7.21951,209,831 - 51,237,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1951,219,660 - 51,235,257 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1958,014,788 - 58,029,351 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01958,694,560 - 58,709,533 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,913,384 - 60,927,951 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,973,447 - 55,998,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,982,740 - 55,998,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01966,678,990 - 66,706,989 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41953,503,467 - 53,518,440 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11953,508,370 - 53,523,966 (+)NCBI
Celera1950,455,220 - 50,470,193 (+)NCBICelera
Cytogenetic Map19q12NCBI
DPEP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21899,399,032 - 99,426,756 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116105,315,996 - 105,342,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01670,365,900 - 70,392,377 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,971,984 - 89,997,978 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,975,105 - 89,997,978 (+)Ensemblpanpan1.1panPan2
DPEP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,909,034 - 63,923,309 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,909,042 - 63,923,492 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,921,890 - 63,936,207 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,136,884 - 64,151,198 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,136,892 - 64,151,287 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,156,932 - 64,171,234 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,994,537 - 64,008,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,401,112 - 64,415,426 (-)NCBIUU_Cfam_GSD_1.0
Dpep1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934924,625,555 - 24,643,322 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936641379,083 - 391,918 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936641379,112 - 384,711 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPEP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6361,197 - 376,616 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16361,187 - 385,757 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26488,005 - 503,439 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233484
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,963,509 - 74,987,469 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl574,977,290 - 74,987,546 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023669841183 - 2,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpep1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746310,248 - 315,654 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746310,361 - 321,053 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000003326   ⟹   ENSCLAP00000003261
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555413,204,055 - 3,215,565 (+)Ensembl
RefSeq Acc Id: XM_005411038   ⟹   XP_005411095
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,209,507 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411039   ⟹   XP_005411096
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,209,508 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411041   ⟹   XP_005411098
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,421 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411042   ⟹   XP_005411099
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,421 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411043   ⟹   XP_005411100
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,717 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411044   ⟹   XP_005411101
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,716 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411045   ⟹   XP_005411102
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,421 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507943   ⟹   XP_013363397
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,204,717 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507944   ⟹   XP_013363398
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,207,687 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013507945   ⟹   XP_013363399
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555413,209,506 - 3,215,514 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005411098   ⟸   XM_005411041
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411099   ⟸   XM_005411042
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411102   ⟸   XM_005411045
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411100   ⟸   XM_005411043
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411101   ⟸   XM_005411044
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411095   ⟸   XM_005411038
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005411096   ⟸   XM_005411039
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363397   ⟸   XM_013507943
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363398   ⟸   XM_013507944
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363399   ⟸   XM_013507945
- UniProtKB: A0A8C2UPK3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000003261   ⟸   ENSCLAT00000003326


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002340 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003326 ENTREZGENE
  ENSCLAT00000003326.1 UniProtKB/TrEMBL
Gene3D-CATH Metal-dependent hydrolases UniProtKB/TrEMBL
InterPro Dipep_AS UniProtKB/TrEMBL
  Metal_Hydrolase UniProtKB/TrEMBL
  Pept_M19 UniProtKB/TrEMBL
NCBI Gene Dpep1 ENTREZGENE
PANTHER PTHR10443 UniProtKB/TrEMBL
  PTHR10443:SF38 UniProtKB/TrEMBL
Pfam Peptidase_M19 UniProtKB/TrEMBL
PROSITE RENAL_DIPEPTIDASE_1 UniProtKB/TrEMBL
  RENAL_DIPEPTIDASE_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF51556 UniProtKB/TrEMBL
UniProt A0A8C2UPK3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-08 Dpep1  dipeptidase 1    dipeptidase 1 (renal)  Symbol and/or name change 5135510 APPROVED