Cntf (ciliary neurotrophic factor) - Rat Genome Database

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Gene: Cntf (ciliary neurotrophic factor) Chinchilla lanigera
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Symbol: Cntf
Name: ciliary neurotrophic factor
RGD ID: 8962485
Description: ENCODES a protein that exhibits ciliary neurotrophic factor receptor binding (ortholog); cytokine activity (ortholog); growth factor activity (ortholog); INVOLVED IN astrocyte activation (ortholog); ciliary neurotrophic factor-mediated signaling pathway (ortholog); membrane hyperpolarization (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Cerebral Hemorrhage (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555113,527,552 - 3,534,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555113,527,552 - 3,531,275 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Cntf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555113,527,552 - 3,534,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555113,527,552 - 3,531,275 (+)NCBIChiLan1.0ChiLan1.0
CNTF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1158,622,665 - 58,625,733 (+)EnsemblGRCh38hg38GRCh38
GRCh381158,622,665 - 58,625,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371158,390,138 - 58,393,206 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361158,146,721 - 58,149,778 (+)NCBINCBI36hg18NCBI36
Build 341158,146,720 - 58,149,778NCBI
Celera1155,749,246 - 55,752,306 (+)NCBI
Cytogenetic Map11q12.1NCBI
HuRef1154,738,219 - 54,741,279 (+)NCBIHuRef
CHM1_11158,255,656 - 58,258,716 (+)NCBICHM1_1
Cntf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391912,740,892 - 12,742,996 (-)NCBIGRCm39mm39
GRCm39 Ensembl1912,741,024 - 12,742,996 (-)Ensembl
GRCm381912,763,528 - 12,765,632 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1912,763,660 - 12,765,632 (-)EnsemblGRCm38mm10GRCm38
MGSCv371912,838,018 - 12,840,122 (-)NCBIGRCm37mm9NCBIm37
MGSCv361912,830,679 - 12,845,972 (-)NCBImm8
Celera1913,428,744 - 13,430,848 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.73NCBI
Cntf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21209,887,854 - 209,889,877 (-)NCBI
Rnor_6.0 Ensembl1229,599,009 - 229,601,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01229,599,009 - 229,601,032 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01236,752,366 - 236,754,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41215,842,668 - 215,844,691 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11216,001,097 - 216,003,121 (-)NCBI
Celera1207,298,120 - 207,300,143 (-)NCBICelera
RH 3.4 Map11492.6RGD
Cytogenetic Map1q43NCBI
CNTF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11157,336,792 - 57,341,127 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1157,336,792 - 57,341,121 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01153,876,081 - 53,882,870 (+)NCBIMhudiblu_PPA_v0panPan3
CNTF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11837,758,148 - 37,765,698 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1837,294,972 - 37,302,526 (-)NCBI
ROS_Cfam_1.01838,411,043 - 38,418,605 (-)NCBI
UMICH_Zoey_3.11838,010,392 - 38,017,942 (-)NCBI
UNSW_CanFamBas_1.01837,581,125 - 37,588,678 (-)NCBI
UU_Cfam_GSD_1.01838,203,356 - 38,210,926 (-)NCBI
Cntf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494713,596,340 - 13,602,966 (-)NCBI
SpeTri2.0NW_0049365813,710,171 - 3,715,753 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNTF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1212,492,777 - 12,495,401 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,129,497 - 12,133,389 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CNTF
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1114,724,562 - 14,730,698 (-)NCBI
ChlSab1.1 Ensembl114,728,383 - 14,730,150 (-)Ensembl
Cntf
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248641,785,215 - 1,788,608 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003973   ⟹   ENSCLAP00000003897
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555113,527,552 - 3,534,348 (+)Ensembl
RefSeq Acc Id: XM_005408041   ⟹   XP_005408098
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555113,527,552 - 3,531,275 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408098 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005408098   ⟸   XM_005408041
- Sequence:
RefSeq Acc Id: ENSCLAP00000003897   ⟸   ENSCLAT00000003973


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002770 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003897 ENTREZGENE
Ensembl Transcript ENSCLAT00000003973 ENTREZGENE
NCBI Gene Cntf ENTREZGENE