Mtr (5-methyltetrahydrofolate-homocysteine methyltransferase) - Rat Genome Database

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Gene: Mtr (5-methyltetrahydrofolate-homocysteine methyltransferase) Chinchilla lanigera
Analyze
Symbol: Mtr
Name: 5-methyltetrahydrofolate-homocysteine methyltransferase
RGD ID: 8961365
Description: ENCODES a protein that exhibits amino acid binding (ortholog); folic acid binding (ortholog); methionine synthase activity (ortholog); INVOLVED IN axon regeneration (ortholog); cellular response to methionine (ortholog); cellular response to nitric oxide (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; altered folate mediated one-carbon metabolic pathway; choline metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methionine synthase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554923,376,512 - 3,474,180 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554923,372,915 - 3,474,173 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Mtr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554923,376,512 - 3,474,180 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554923,372,915 - 3,474,173 (-)NCBIChiLan1.0ChiLan1.0
MTR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381236,795,281 - 236,903,981 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1236,795,260 - 236,921,278 (+)EnsemblGRCh38hg38GRCh38
GRCh371236,958,581 - 237,067,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361235,025,341 - 235,130,585 (+)NCBINCBI36Build 36hg18NCBI36
Build 341233,284,758 - 233,390,001NCBI
Celera1210,207,757 - 210,316,611 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1207,414,687 - 207,523,271 (+)NCBIHuRef
CHM1_11238,230,032 - 238,338,720 (+)NCBICHM1_1
T2T-CHM13v2.01236,206,330 - 236,315,021 (+)NCBIT2T-CHM13v2.0
Mtr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391312,196,217 - 12,273,090 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1312,197,598 - 12,272,999 (-)EnsemblGRCm39 Ensembl
GRCm381312,181,331 - 12,258,199 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1312,182,712 - 12,258,113 (-)EnsemblGRCm38mm10GRCm38
MGSCv371312,279,086 - 12,350,267 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361312,240,869 - 12,312,428 (-)NCBIMGSCv36mm8
Celera1312,106,428 - 12,177,671 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map134.52NCBI
Mtr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81762,911,705 - 62,996,544 (+)NCBIGRCr8
mRatBN7.21758,219,998 - 58,308,560 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1758,220,071 - 58,304,822 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1761,408,217 - 61,492,723 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01765,411,342 - 65,495,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01759,565,531 - 59,650,043 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01766,210,444 - 66,295,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1766,210,461 - 66,295,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01767,954,893 - 68,041,488 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41768,782,708 - 68,867,101 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11768,793,540 - 68,877,930 (+)NCBI
Celera1762,230,512 - 62,313,601 (-)NCBICelera
Cytogenetic Map17q12.1NCBI
MTR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,253,398 - 12,365,190 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1112,469,507 - 12,584,105 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,353,195 - 212,463,304 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11217,352,707 - 217,461,313 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1217,358,050 - 217,460,946 (+)Ensemblpanpan1.1panPan2
MTR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.143,219,851 - 3,328,000 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl43,215,090 - 3,328,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha43,267,770 - 3,375,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.043,240,178 - 3,347,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl43,243,029 - 3,347,943 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.143,239,421 - 3,346,967 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.043,370,826 - 3,478,490 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.043,591,890 - 3,699,525 (-)NCBIUU_Cfam_GSD_1.0
Mtr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934439,925,911 - 40,014,880 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648416,087,923 - 16,180,148 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648416,087,924 - 16,180,089 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1454,546,978 - 54,652,763 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11454,546,978 - 54,652,780 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21458,497,706 - 58,627,105 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12573,935,666 - 74,039,872 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2573,935,225 - 74,038,741 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605576,034,340 - 76,141,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477513,792,043 - 13,896,559 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477513,791,690 - 13,903,888 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024456   ⟹   ENSCLAP00000024222
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554923,376,512 - 3,474,180 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000024457   ⟹   ENSCLAP00000024223
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554923,376,512 - 3,474,180 (-)Ensembl
RefSeq Acc Id: XM_005404926   ⟹   XP_005404983
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554923,372,915 - 3,474,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005404927   ⟹   XP_005404984
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554923,372,915 - 3,474,173 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404983 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404984 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024222
  ENSCLAP00000024222.1
  ENSCLAP00000024223
  ENSCLAP00000024223.1
RefSeq Acc Id: XP_005404983   ⟸   XM_005404926
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YUH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404984   ⟸   XM_005404927
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W357 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024223   ⟸   ENSCLAT00000024457
Ensembl Acc Id: ENSCLAP00000024222   ⟸   ENSCLAT00000024456

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016630 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024456 ENTREZGENE
  ENSCLAT00000024456.1 UniProtKB/TrEMBL
  ENSCLAT00000024457 ENTREZGENE
  ENSCLAT00000024457.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1240.10 UniProtKB/TrEMBL
  3.10.196.10 UniProtKB/TrEMBL
  3.20.20.20 UniProtKB/TrEMBL
  3.20.20.330 UniProtKB/TrEMBL
  Cobalamin-binding domain UniProtKB/TrEMBL
  Cobalamin-dependent Methionine Synthase, domain 2 UniProtKB/TrEMBL
InterPro Cbl-bd_cap UniProtKB/TrEMBL
  Cobalamin-bd UniProtKB/TrEMBL
  Cobalamin-bd_sf UniProtKB/TrEMBL
  Dihydropteroate_synth-like UniProtKB/TrEMBL
  HCY_dom UniProtKB/TrEMBL
  HCY_dom_sf UniProtKB/TrEMBL
  Met_Synthase/Corrinoid UniProtKB/TrEMBL
  Met_synthase_B12-bd UniProtKB/TrEMBL
  MetH UniProtKB/TrEMBL
  Meth_synthase_dom UniProtKB/TrEMBL
  Pterin-binding_dom UniProtKB/TrEMBL
  VitB12-dep_Met_synth_activ_dom UniProtKB/TrEMBL
  VitB12-dep_Met_synth_activ_sf UniProtKB/TrEMBL
NCBI Gene Mtr ENTREZGENE
PANTHER METHIONINE SYNTHASE UniProtKB/TrEMBL
  METHIONINE SYNTHASE UniProtKB/TrEMBL
Pfam B12-binding UniProtKB/TrEMBL
  B12-binding_2 UniProtKB/TrEMBL
  Met_synt_B12 UniProtKB/TrEMBL
  Pterin_bind UniProtKB/TrEMBL
  S-methyl_trans UniProtKB/TrEMBL
PIRSF MetH UniProtKB/TrEMBL
PROSITE ADOMET_ACTIVATION UniProtKB/TrEMBL
  B12_BINDING UniProtKB/TrEMBL
  B12_BINDING_NTER UniProtKB/TrEMBL
  HCY UniProtKB/TrEMBL
  PTERIN_BINDING UniProtKB/TrEMBL
SMART B12-binding_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47644 UniProtKB/TrEMBL
  SSF51717 UniProtKB/TrEMBL
  SSF52242 UniProtKB/TrEMBL
  SSF56507 UniProtKB/TrEMBL
  SSF82282 UniProtKB/TrEMBL
UniProt A0A8C2W357 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YUH6 ENTREZGENE, UniProtKB/TrEMBL