Golm2 (golgi membrane protein 2) - Rat Genome Database

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Gene: Golm2 (golgi membrane protein 2) Chinchilla lanigera
Analyze
Symbol: Golm2
Name: golgi membrane protein 2 (Ensembl:cancer susceptibility 4)
RGD ID: 8960515
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cancer susceptibility 4; cancer susceptibility candidate 4; Casc4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,812,722 - 10,947,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,812,414 - 10,949,563 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Golm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541610,812,722 - 10,947,505 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541610,812,414 - 10,949,563 (+)NCBIChiLan1.0ChiLan1.0
GOLM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381544,288,719 - 44,415,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1544,288,719 - 44,415,758 (+)EnsemblGRCh38hg38GRCh38
GRCh371544,580,917 - 44,707,956 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361542,368,221 - 42,495,247 (+)NCBINCBI36Build 36hg18NCBI36
Celera1521,470,694 - 21,597,720 (+)NCBICelera
Cytogenetic Map15q15.3NCBI
HuRef1521,404,106 - 21,530,890 (+)NCBIHuRef
CHM1_11544,699,085 - 44,826,133 (+)NCBICHM1_1
T2T-CHM13v2.01542,096,412 - 42,223,439 (+)NCBIT2T-CHM13v2.0
Golm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392121,696,255 - 121,766,701 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2121,697,451 - 121,766,701 (+)EnsemblGRCm39 Ensembl
GRCm382121,866,970 - 121,936,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2121,866,970 - 121,936,220 (+)EnsemblGRCm38mm10GRCm38
MGSCv372121,692,706 - 121,761,956 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362121,558,571 - 121,627,300 (+)NCBIMGSCv36mm8
Celera2123,016,679 - 123,089,769 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.43NCBI
Golm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83129,280,623 - 129,349,895 (+)NCBIGRCr8
mRatBN7.23108,827,017 - 108,896,207 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3108,827,047 - 108,896,207 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3112,501,061 - 112,570,258 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03121,096,602 - 121,165,792 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03118,756,977 - 118,826,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03113,818,649 - 113,887,550 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3113,818,872 - 113,887,495 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,357,864 - 120,426,765 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43108,655,876 - 108,723,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13108,561,442 - 108,626,686 (+)NCBI
Celera3107,726,841 - 107,796,023 (+)NCBICelera
Cytogenetic Map3q35NCBI
GOLM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21633,536,837 - 33,665,078 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11537,698,433 - 37,828,105 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01523,248,227 - 23,372,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11541,418,910 - 41,542,748 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1541,418,910 - 41,542,748 (+)Ensemblpanpan1.1panPan2
GOLM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13011,000,076 - 11,099,774 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3011,000,890 - 11,097,562 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3011,056,899 - 11,156,316 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03011,136,140 - 11,235,893 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3011,136,662 - 11,235,888 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13011,043,349 - 11,143,071 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03011,167,306 - 11,267,082 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03011,286,103 - 11,385,881 (+)NCBIUU_Cfam_GSD_1.0
Golm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864089,464,152 - 89,564,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,311,914 - 7,412,534 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364717,312,211 - 7,412,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1127,131,105 - 127,238,601 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11127,132,387 - 127,238,488 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,951,608 - 141,994,394 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12638,640,461 - 38,762,865 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2638,639,819 - 38,762,847 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048102,280,404 - 102,403,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480411,818,512 - 11,964,501 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015621   ⟹   ENSCLAP00000015459
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,812,722 - 10,947,505 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000015622   ⟹   ENSCLAP00000015460
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,812,722 - 10,947,505 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000015623   ⟹   ENSCLAP00000015461
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541610,812,722 - 10,947,505 (+)Ensembl
RefSeq Acc Id: XM_013512605   ⟹   XP_013368059
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541610,812,414 - 10,949,563 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368059 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015459
  ENSCLAP00000015459.1
  ENSCLAP00000015460.1
  ENSCLAP00000015461.1
Reference Protein Sequences
RefSeq Acc Id: XP_013368059   ⟸   XM_013512605
- UniProtKB: A0A8C2VH88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015461   ⟸   ENSCLAT00000015623
RefSeq Acc Id: ENSCLAP00000015460   ⟸   ENSCLAT00000015622
RefSeq Acc Id: ENSCLAP00000015459   ⟸   ENSCLAT00000015621


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010634 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015621 ENTREZGENE
  ENSCLAT00000015621.1 UniProtKB/TrEMBL
  ENSCLAT00000015622.1 UniProtKB/TrEMBL
  ENSCLAT00000015623.1 UniProtKB/TrEMBL
InterPro GOLM1/CASC4 UniProtKB/TrEMBL
NCBI Gene Casc4 ENTREZGENE
PANTHER PTHR15896 UniProtKB/TrEMBL
  PTHR15896:SF7 UniProtKB/TrEMBL
PRINTS GOLM1CASC4 UniProtKB/TrEMBL
UniProt A0A8C2VH88 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VIZ2_CHILA UniProtKB/TrEMBL
  A0A8C2VP49_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 Golm2  golgi membrane protein 2  Casc4  cancer susceptibility 4  Symbol and/or name change 5135510 APPROVED
2017-01-31 Casc4  cancer susceptibility 4    cancer susceptibility candidate 4  Symbol and/or name change 5135510 APPROVED