Strc (stereocilin) - Rat Genome Database

Name: Strc
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Strc (stereocilin) Chinchilla lanigera

Analyze

Symbol:

Strc

Name:

stereocilin

RGD ID:

8960408

Description:

INVOLVED IN auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 16 (ortholog); autosomal recessive nonsyndromic deafness 16 (ortholog); Bloom syndrome (ortholog); FOUND IN kinocilium (ortholog); stereocilium tip (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STRC (stereocilin)	NCBI	Ortholog
Mus musculus (house mouse):	Strc (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Strc (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC103785466 (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STRC (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Strc (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STRC (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103245735 (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Strc (stereocilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	10,139,420 - 10,141,906 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness 16 (ISO)

autosomal recessive nonsyndromic deafness 16 (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

nonsyndromic deafness (ISO)

Sensorineural Deafness and Male Infertility (ISO)

sensorineural hearing loss (ISO)

spermatogenic failure 7 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

auditory receptor cell stereocilium organization (ISO)

detection of mechanical stimulus involved in sensory perception of sound (ISO)

Cellular Component

kinocilium (ISO)

stereocilium tip (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data

Strc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955416	10,139,420 - 10,141,906 (-)	NCBI	ChiLan1.0	ChiLan1.0

STRC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	43,599,563 - 43,618,800 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	43,599,563 - 43,618,800 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	43,891,761 - 43,910,998 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	41,679,053 - 41,698,290 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	41,679,052 - 41,698,290	NCBI
Celera	15	20,720,867 - 20,723,140 (+)	NCBI		Celera
Celera	15	20,841,352 - 20,846,505 (-)	NCBI		Celera
Cytogenetic Map	15	q15.3	NCBI
HuRef	15	20,721,598 - 20,740,111 (-)	NCBI		HuRef
CHM1_1	15	44,009,808 - 44,029,087 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	41,406,922 - 41,426,159 (-)	NCBI		T2T-CHM13v2.0

Strc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	121,193,729 - 121,211,851 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	121,194,209 - 121,217,649 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	121,363,248 - 121,381,370 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	121,363,728 - 121,387,168 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	121,189,463 - 121,206,676 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	121,055,168 - 121,072,381 (-)	NCBI		MGSCv36	mm8
Celera	2	122,514,641 - 122,531,929 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	60.37	NCBI

Strc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	128,785,817 - 128,811,773 (-)	NCBI		GRCr8
mRatBN7.2	3	108,335,920 - 108,355,114 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	108,335,747 - 108,354,134 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	3	113,324,403 - 113,343,513 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	113,324,698 - 113,342,675 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	119,863,952 - 119,882,260 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	108,164,129 - 108,182,106 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	107,237,716 - 107,256,326 (-)	NCBI		Celera
Cytogenetic Map	3	q35	NCBI

LOC103785466
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	32,952,613 - 32,977,519 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	37,114,439 - 37,139,237 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	22,660,952 - 22,706,416 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	40,740,196 - 40,771,092 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	40,740,387 - 40,757,999 (-)	Ensembl	panpan1.1		panPan2

STRC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	10,444,726 - 10,459,058 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	10,444,793 - 10,460,785 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	10,503,116 - 10,517,450 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	10,581,219 - 10,595,553 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	10,581,288 - 10,597,280 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	10,490,359 - 10,505,838 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	10,612,124 - 10,626,458 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	10,732,015 - 10,746,349 (-)	NCBI		UU_Cfam_GSD_1.0

Strc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	88,912,019 - 88,929,362 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	6,760,294 - 6,777,425 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	6,760,289 - 6,777,425 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STRC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	127,835,622 - 127,852,339 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	127,830,759 - 127,852,392 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	142,660,378 - 142,682,006 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103245735
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	39,376,441 - 39,397,613 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	39,378,318 - 39,401,072 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666182	75,632 - 121,228 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Strc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624838	2,896,147 - 2,910,268 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624838	2,894,945 - 2,913,030 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013512417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01017109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01231457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013512417 ⟹ XP_013367871

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955416	10,139,420 - 10,141,906 (-)	NCBI

Sequence:

show sequence

ATGGGAGCCAATGCTAGGACTCCTGGGGATGTGCTGGCACTGCCAGGACAGGAGCAGACTCCCT
GGGACTTCCTGGCGTATCAGGCAGGTGTTGTGGGTGGACTCATGGAGGTGCTGGTGGTAGTCTT
GGTTCCTGGGGGCGATGCAGTCCCGATAGGGCCCCAGGGTTTGTGGAGCCTGCTTACCCCACCA
AGGGAGCTGGGCTCTGAGAAGGCTCTTTGGGGTGGTCTGCTATGTGCAGTGGGGAGACCCTATC
CACATTGCCTTCCAAGAGGGGCTGCTCCGAGACACTCCTTGCAAGATGAGCTCNTCTCCACTCT
GAGCCAGCCAGAGCCTGATGCCAGTGGGCAATGCCAAAGGGGTGAGACATGCCAAGACTGGGGC
TGGGCACACACCCTTTCCTGGGACGTGCAGGCACTGAGCTTTCTGTCCGGANCCCCTGCACTCC
TCCACTGCCTGAGCACTGGTGTGCCCCTGCCCAGGGCCNNTCCCAGACAATGGCGAGCCACCTC
CGCGGAGGCCCTCTGCGAGGACCACCCAGGCCCCNCACCACCCTGGAGCATTGCCAGCTTCTCC
ATCCGCTTGCTGTGCCAGCACACCGAGCCTGCCGTCCACCCCTCCCAGCATTGCTGCATCTGCC
CGACAGCTGTGTGGTACGCAGTCTCACAAGCACCAGGTGCCCAGCGCTGGCTGCAGGCTTGCCG
TGACCAGTTTTCTGGTCGGTTTGTGGATGCGGTCTGTAGTAACCTCTCCTTTTCGGCCCTGGCC
GGTCCCAACTGCCACGTGGGAAAACAGCTCTGTGCTGGTCACTTCCCACCCGCTACCAGCACCC
GCAACCCCTCCTCTCATCCTGCCCTGGGCTGCCCCTAA

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Protein Sequences


Protein RefSeqs	XP_013367871	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013367871 ⟸ XM_013512417

- Sequence:

show sequence

MGANARTPGDVLALPGQEQTPWDFLAYQAGVVGGLMEVLVVVLVPGGDAVPIGPQGLWSLLTPP
RELGSEKALWGGLLCAVGRPYPHCLPRGAAPRHSLQDELXSTLSQPEPDASGQCQRGETCQDWG
WAHTLSWDVQALSFLSGXPALLHCLSTGVPLPRAXPRQWRATSAEALCEDHPGPXPPWSIASFS
IRLLCQHTEPAVHPSQHCCICPTAVWYAVSQAPGAQRWLQACRDQFSGRFVDAVCSNLSFSALA
GPNCHVGKQLCAGHFPPATSTRNPSSHPALGCP

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102007428	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Strc	stereocilin	LOC102007428	putative stereocilin-like protein-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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