Gphn (gephyrin) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gphn (gephyrin) Chinchilla lanigera
Analyze
Symbol: Gphn
Name: gephyrin
RGD ID: 8956762
Description: ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); molybdopterin adenylyltransferase activity (ortholog); INVOLVED IN establishment of protein localization (ortholog); establishment of synaptic specificity at neuromuscular junction (ortholog); gamma-aminobutyric acid receptor clustering (ortholog); PARTICIPATES IN Inhibitory synaptic transmission pathway; molybdenum cofactor biosynthetic pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); alcohol use disorder (ortholog); cerebral palsy (ortholog); FOUND IN anchored component of synaptic membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554663,016,479 - 3,526,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Gphn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554663,016,479 - 3,526,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBIChiLan1.0ChiLan1.0
GPHN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381466,508,147 - 67,735,355 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1466,507,407 - 67,181,803 (+)EnsemblGRCh38hg38GRCh38
GRCh371466,974,865 - 67,648,520 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361466,043,878 - 66,718,278 (+)NCBINCBI36hg18NCBI36
Build 341466,044,988 - 66,718,268NCBI
Celera1447,033,183 - 47,707,584 (+)NCBI
Cytogenetic Map14q23.3-q24.1NCBI
HuRef1447,144,073 - 47,817,837 (+)NCBIHuRef
CHM1_11466,912,247 - 67,587,111 (+)NCBICHM1_1
Gphn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391278,264,099 - 78,731,546 (+)NCBIGRCm39mm39
GRCm39 Ensembl1278,273,153 - 78,731,546 (+)Ensembl
GRCm381278,217,325 - 78,684,772 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,226,379 - 78,684,772 (+)EnsemblGRCm38mm10GRCm38
MGSCv371279,327,642 - 79,785,759 (+)NCBIGRCm37mm9NCBIm37
MGSCv361279,145,574 - 79,603,578 (+)NCBImm8
Celera1279,690,472 - 80,148,022 (+)NCBICelera
Cytogenetic Map12C3NCBI
Gphn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2696,954,365 - 97,483,617 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl696,892,148 - 97,483,612 (+)Ensembl
Rnor_6.06101,327,874 - 101,859,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6101,532,518 - 101,859,164 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06111,210,069 - 111,237,661 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06110,709,516 - 111,190,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46100,833,004 - 101,302,957 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16100,836,459 - 101,306,408 (+)NCBI
Celera695,358,601 - 95,872,910 (+)NCBICelera
Cytogenetic Map6q24NCBI
GPHN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11465,963,473 - 66,634,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1466,137,166 - 66,634,550 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01447,081,527 - 47,755,182 (+)NCBIMhudiblu_PPA_v0panPan3
GPHN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1840,585,625 - 41,204,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl840,585,883 - 41,203,245 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha840,270,522 - 40,895,744 (+)NCBI
ROS_Cfam_1.0840,807,578 - 41,430,716 (+)NCBI
ROS_Cfam_1.0 Ensembl840,807,424 - 41,430,706 (+)Ensembl
UMICH_Zoey_3.1840,427,159 - 41,049,600 (+)NCBI
UNSW_CanFamBas_1.0840,497,926 - 41,123,844 (+)NCBI
UU_Cfam_GSD_1.0840,856,432 - 41,482,422 (+)NCBI
Gphn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,626,233 - 64,220,771 (-)NCBI
SpeTri2.0NW_0049364959,970,683 - 10,565,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPHN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl790,346,590 - 91,041,189 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1790,345,726 - 90,913,625 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2796,902,547 - 97,222,781 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPHN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12443,702,384 - 44,421,890 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2443,880,344 - 44,422,276 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605331,896,980 - 32,651,860 (+)NCBIVero_WHO_p1.0
Gphn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473433,871,664 - 34,483,770 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005399095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005399096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005399098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005399099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005399100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013521947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01050780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01050795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCQ01098398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000006869   ⟹   ENSCLAP00000006759
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554663,016,479 - 3,526,231 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006870   ⟹   ENSCLAP00000006760
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554663,018,307 - 3,526,231 (-)Ensembl
RefSeq Acc Id: XM_005399095   ⟹   XP_005399152
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399096   ⟹   XP_005399153
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399098   ⟹   XP_005399155
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399099   ⟹   XP_005399156
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005399100   ⟹   XP_005399157
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521942   ⟹   XP_013377396
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521943   ⟹   XP_013377397
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521944   ⟹   XP_013377398
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521945   ⟹   XP_013377399
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,526,375 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013521947   ⟹   XP_013377401
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554663,017,474 - 3,401,148 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005399155   ⟸   XM_005399098
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005399157   ⟸   XM_005399100
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005399156   ⟸   XM_005399099
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005399153   ⟸   XM_005399096
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005399152   ⟸   XM_005399095
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013377397   ⟸   XM_013521943
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013377399   ⟸   XM_013521945
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013377398   ⟸   XM_013521944
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013377396   ⟸   XM_013521942
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013377401   ⟸   XM_013521947
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSCLAP00000006760   ⟸   ENSCLAT00000006870
RefSeq Acc Id: ENSCLAP00000006759   ⟸   ENSCLAT00000006869


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004765 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000006759 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000006760 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006869 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000006870 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Gphn ENTREZGENE
UniProt A0A8C2UZZ5_CHILA UniProtKB/TrEMBL
  A0A8C2V2F2_CHILA UniProtKB/TrEMBL