Itgam (integrin subunit alpha M) - Rat Genome Database

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Gene: Itgam (integrin subunit alpha M) Chinchilla lanigera
Analyze
Symbol: Itgam
Name: integrin subunit alpha M
RGD ID: 8956397
Description: ENCODES a protein that exhibits cargo receptor activity (ortholog); complement component C3b binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN activated T cell proliferation (ortholog); amyloid-beta clearance (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); allergic contact dermatitis (ortholog); branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: integrin alpha-M; integrin, alpha M (complement component 3 receptor 3 subunit)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,260,759 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,116,886 - 8,160,806 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Itgam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,260,759 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,116,886 - 8,160,806 (+)NCBIChiLan1.0ChiLan1.0
ITGAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1631,259,967 - 31,332,892 (+)EnsemblGRCh38hg38GRCh38
GRCh381631,259,975 - 31,332,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,271,296 - 31,344,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,178,789 - 31,251,714 (+)NCBINCBI36hg18NCBI36
Build 341631,178,811 - 31,251,691NCBI
Celera1628,953,869 - 29,026,766 (-)NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,832,071 - 28,904,704 (+)NCBIHuRef
CHM1_11632,589,199 - 32,661,884 (+)NCBICHM1_1
Itgam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,661,812 - 127,717,663 (+)NCBIGRCm39mm39
GRCm39 Ensembl7127,661,812 - 127,717,663 (+)Ensembl
GRCm387128,062,640 - 128,118,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7128,062,640 - 128,118,491 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,206,154 - 135,262,005 (+)NCBIGRCm37mm9NCBIm37
MGSCv367127,853,854 - 127,908,772 (+)NCBImm8
Celera7127,897,978 - 127,954,099 (+)NCBICelera
Cytogenetic Map7F3NCBI
Itgam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,659,047 - 182,709,495 (+)NCBI
Rnor_6.0 Ensembl1199,495,298 - 199,623,960 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01199,495,312 - 199,545,738 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01206,522,794 - 206,573,619 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,334,413 - 187,385,583 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,484,293 - 187,535,464 (+)NCBI
Celera1180,308,890 - 180,355,319 (+)NCBICelera
Cytogenetic Map1q37NCBI
ITGAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,630,983 - 31,702,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,630,146 - 31,702,406 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,634,476 - 23,707,147 (-)NCBIMhudiblu_PPA_v0panPan3
ITGAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,944,062 - 16,996,525 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,808,971 - 16,996,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,516,000 - 18,571,559 (-)NCBI
ROS_Cfam_1.0617,068,771 - 17,127,224 (-)NCBI
UMICH_Zoey_3.1616,871,848 - 16,927,654 (-)NCBI
UNSW_CanFamBas_1.0616,791,010 - 16,846,822 (-)NCBI
UU_Cfam_GSD_1.0617,102,490 - 17,158,038 (-)NCBI
Itgam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,528,028 - 125,576,877 (+)NCBI
SpeTri2.0NW_0049365438,460,526 - 8,508,524 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGAM
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,957,162 - 28,042,697 (+)NCBI
ChlSab1.1 Ensembl527,957,324 - 28,042,691 (+)Ensembl
Vero_WHO_p1.0NW_0236660681,400,356 - 1,493,976 (-)NCBI
Itgam
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,316,505 - 14,367,841 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016220   ⟹   ENSCLAP00000016056
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,260,759 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016221   ⟹   ENSCLAP00000016057
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,220,546 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016222   ⟹   ENSCLAP00000016058
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,161,336 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016223   ⟹   ENSCLAP00000016059
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,116,834 - 8,161,336 (+)Ensembl
RefSeq Acc Id: XM_005405314   ⟹   XP_005405371
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,116,888 - 8,160,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005405316   ⟹   XP_005405373
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,116,887 - 8,160,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504857   ⟹   XP_013360311
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,116,887 - 8,160,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504858   ⟹   XP_013360312
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,116,886 - 8,160,806 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405371 (Get FASTA)   NCBI Sequence Viewer  
  XP_005405373 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360311 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360312 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005405373   ⟸   XM_005405316
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005405371   ⟸   XM_005405314
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013360312   ⟸   XM_013504858
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013360311   ⟸   XM_013504857
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000016056   ⟸   ENSCLAT00000016220
RefSeq Acc Id: ENSCLAP00000016058   ⟸   ENSCLAT00000016222
RefSeq Acc Id: ENSCLAP00000016057   ⟸   ENSCLAT00000016221
RefSeq Acc Id: ENSCLAP00000016059   ⟸   ENSCLAT00000016223


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011053 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016059 ENTREZGENE
Ensembl Transcript ENSCLAT00000016223 ENTREZGENE
NCBI Gene Itgam ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Itgam  integrin subunit alpha M    integrin, alpha M (complement component 3 receptor 3 subunit)  Symbol and/or name change 5135510 APPROVED