Ssbp3 (single stranded DNA binding protein 3)

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Gene: Ssbp3 (single stranded DNA binding protein 3) Chinchilla lanigera

Analyze

Symbol:

Ssbp3

Name:

single stranded DNA binding protein 3

RGD ID:

8956351

Description:

ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN head development (ortholog); head morphogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN protein-containing complex (ortholog); transcription regulator complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

single-stranded DNA-binding protein 3

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,901,150 - 5,049,341 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Developmental Disease (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

head development (ISO)

head morphogenesis (ISO)

hematopoietic progenitor cell differentiation (ISO)

mesendoderm development (ISO)

midbrain-hindbrain boundary initiation (ISO)

positive regulation of anterior head development (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

prechordal plate formation (ISO)

protein-containing complex assembly (ISO)

Cellular Component

protein-containing complex (ISO)

transcription regulator complex (ISO)

Molecular Function

protein binding (ISO)

transcription coactivator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Ssbp3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,901,150 - 5,049,341 (+)	NCBI	ChiLan1.0	ChiLan1.0

SSBP3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	54,225,432 - 54,413,490 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	54,225,432 - 54,413,479 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	54,691,105 - 54,879,163 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	54,464,783 - 54,644,680 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	54,404,615 - 54,583,917	NCBI
Celera	1	52,979,826 - 53,159,767 (-)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	52,806,513 - 52,987,387 (-)	NCBI		HuRef
CHM1_1	1	54,807,651 - 54,988,420 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	54,108,317 - 54,296,354 (-)	NCBI		T2T-CHM13v2.0

Ssbp3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	106,768,667 - 106,906,891 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	106,767,898 - 106,906,891 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	106,911,470 - 107,049,694 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	106,910,701 - 107,049,694 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	106,584,075 - 106,722,299 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	106,409,402 - 106,547,626 (+)	NCBI		MGSCv36	mm8
Celera	4	105,272,425 - 105,410,615 (+)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI

Ssbp3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	121,691,370 - 121,828,035 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	121,691,393 - 121,827,992 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	124,310,490 - 124,447,492 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	126,033,508 - 126,170,510 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	126,084,812 - 126,221,819 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	126,511,339 - 126,649,830 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	126,511,350 - 126,648,661 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	130,364,154 - 130,500,627 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	127,987,980 - 128,127,771 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	127,993,205 - 128,132,997 (+)	NCBI
Celera	5	120,438,879 - 120,575,397 (+)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

SSBP3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	171,570,724 - 171,749,558 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	53,501,656 - 53,680,682 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	55,094,800 - 55,281,039 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	55,094,820 - 55,272,207 (-)	Ensembl	panpan1.1		panPan2

SSBP3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	54,690,632 - 54,826,691 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	54,662,840 - 54,824,960 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	54,729,165 - 54,893,490 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	54,849,788 - 55,013,185 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	54,849,889 - 55,013,451 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	54,844,717 - 55,009,418 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	54,734,421 - 54,898,735 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	55,123,610 - 55,288,431 (+)	NCBI		UU_Cfam_GSD_1.0

Ssbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	68,458,512 - 68,614,243 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	6,802,052 - 6,956,129 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936522	6,802,057 - 6,957,640 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SSBP3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	157,911,493 - 158,081,476 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	157,911,583 - 158,081,478 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SSBP3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	78,528,630 - 78,708,518 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	38,577,763 - 38,758,509 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ssbp3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624934	161,054 - 311,937 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624934	161,323 - 313,621 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005398528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01049997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01049998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01117941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01040067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000023229 ⟹ ENSCLAP00000023012

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000023230 ⟹ ENSCLAP00000023013

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000023231 ⟹ ENSCLAP00000023014

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	4,901,151 - 5,047,656 (+)	Ensembl

RefSeq Acc Id:

XM_005398528 ⟹ XP_005398585

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,901,150 - 5,049,341 (+)	NCBI

Sequence:

show sequence

GCGGCGGCGGCGGCAGCGGGGCTGGAGGCGCGGAGGGCGGCGCGGGCCGGGCGGGCTGCGGGCG
AGCGAGCTAGCGGGCGAGCGGCGGGCAGCCGGGCGAGCGGCGGCGCAGCGAGGCCGAGCCGGCG
CGGGAGGAGTTCCAGGGCGATGGGGCCGCGGCCCGGGCTGACGCTTTGACAGCTGGAGAGAGCG
CGGAGCCAGCGCCGGAGGGAGGGAGCGCGGCGGGCGAGCGGGCGAACGCCGGGAGGGGGCCGGG
AGCGGGCGGCGCGGGGCAGCCGGACGGTAGCGGCGGCGGCGGCGGCGGGGCTCGGCGCCCTCCT
CTCTGCAGACCATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGACGGGCAGGCTCGGGA
AAAGTTAGCTTTATACGTCTACGAATACTTACTGCATGTAGGAGCACAGAAATCTGCACAGACC
TTCTTGTCAGAGATTCGATGGGAAAAAAACATCACGCTGGGAGAGCCGCCTGGGTTTCTGCACT
CATGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGTGAACA
TTCAAGTGAAGCAAAAGCCTTTCACGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGC
AACATTCCTCCCAACGATGGGATGCCCGGAGGCCCCATCCCGCCGGGTTTCTTTCAGGGTCCTC
CGGGGTCACAGCCCTCGCCGCACGCACAGCCTCCACCTCACAATCCCAGCAGCATGATGGGACC
CCACAGTCAGCCTTTTATGTCACCGCGATACGCAGGCGGCCCCAGGCCCCCGATCAGAATGGGA
AACCAGCCGCCAGGAGGAGTTCCTGGGACACAGCCATTGCTGCCCAATTCCATGGATCCCACAC
GACAGCAAGGCCACCCCAACATGGGAGGATCAATGCAGAGGATGAACCCTCCCCGAGGCATGGG
GCCCATGGGTCCTGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGC
CCCGCCATGCCCGGGATTAACATGGGCCCGGGAGCTGGCAGACCCTGGCCCAATCCCAACAGTG
CTAACTCAATTCCATACTCCTCCTCATCGCCTGGCACCTACGTGGGACCCCCCGGAGGTGGCGG
CCCTCCAGGAACACCCATCATGCCTAGTCCTGCAGATTCAACAAATTCCAGTGACAACATCTAC
ACAATGATTAATCCGGTGCCGCCCGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCTGGCTCGG
ACGGCCCCATGGGAGGCATGGGCGGCATGGAGCCACACCACATGAATGGATCCTTAGGATCAGG
CGACATAGATGGACTTCCAAAAAATTCTCCTAACAACATAAGTGGCATTAGCAATCCTCCAGGC
ACCCCTCGGGACGACAGCGAGCTCGGAGGGAACTTCCTCCACTCCTTTCAGAACGACAACTATT
CTCCAAGCATGACGATGAGTGTGTGACCCCCTTCTCCAGGAAGCTGAGAGAGCCAGCCTTGCAG
GCGGGAAGATACCAGGAATTATGCAAGAAGTGAGGTGTCATTACCAGGAGCTGGGGAGGGCGCC
TCCCCACTCTCCTCAACCCTCTCCTCCACATCCCACCTTCCCCAATTTTAGTTTCATGCAATAA
AAAGGCTGAACTTTTTATTCCATAAAACATGAAGGACAAAACTCAAAAATATATTTCAAGTCAA
CGACCTGGAAAACCCCCACCCCTTGCCCTTTCCCAAAAGGAACTTTTCTGTACATGACACTTTT
TTGTTGTTGTTTTTTGTTTGTTTGTTTGGGGTTTTACTGTTGCTGGGATTTTTTTTTTTTTTTT
TTTTAAATTTGTTTTCAGGAGGGATTTCTTTGGGAAAAAATTTTAAAAATGGAAGCTTCTAGCA
AGCCCCCCACCTCAGCCAGCCTCTTGCTTTCTTTAAAAAAAAAAAAAAAAAAGGAAAAAAGAAG
AAAAGAAACCACAAGCCCTGCTGTCTATCTGCCCCCAAGCCCTACCACCAGGAAAGCTAGTCTA
GGTGTGAGATGCCACACTGTCTTTGTAGCCATCTAAAAATAATAATAATGAACTGGACAGTTTA
CAATCCGTAGTTTCTTTAAAAAAGCCTTTTGGGGAAGGAAACGAAAGGAAGCCGCCCTTCTCTG
CTTGGGGATTTCGGTTTGTGGGACAGCAGGGGCGGACAGGAACCTGCTTTGTTTTGGCCTTGCT
GGCAACAGCAGCACACCTGGACCTCTGGACACAGCCCATCCTGTGGCCCCTGACCGACCTCCTC
CGGGACTCCTGTGGTCGCCGCTGCTGTGACCTGACCGGCGCATGCACTGTGTCCCCAGGACGGC
CTCCTCTCCCTCCTGGGCCTCCTTCCTGGCCGCCGCCTCCAGGCCTCCGCAGCCGTGCCCTGGC
CTCCCAGCGAGAATCCTGCCCGCCGGGTGGTGGCCCTGAGCAGAGCAGGTGAGGCCACCACCAA
CAGGATGGCTATGACCTGGGACTTGGAAACCACGACCTCTGCGTTCTGGGCCCGAGATATTGCA
TTGTCGCTCTGTGCACAGGCAGGGTGGGCTGGAATCTGGGTTTCTTTCTTTTTTTTCCTCCTTT
TTTCTCTCCTCTTTATTTGCCCTCCTTTCTCAAAGATGGGCTGTTGACCAGAATTGCTCTGTAA
ATGCTTGGAACTGGATGGAAGACTTCAGCATAGCTGTGGGGGGTGGGGGGGAGCACCAGAAACC
AAACAGACGTGCTGTTTCCAGTCCTGTTTTTATTTTCAAAAACCGATGAACCCGACGGTGGAGC
CTATCCCCTCCTAGGAGGGGTGACTCATGACACCTCACCCCCCTGGAAACCTTTGTGTCTCGCC
CTGGAAGACACCAAATTCTTTGTACATTTACACTCCCCTCTCCTCCTCCCTACCCCTGTAGCTG
GTCTTTGTTTTATTACCGCCCCTTTCTGATCCATGTATATCATATTATGTGAGATACCATCTGC
CTGAAAAAAGACCTTGTGCGGATTATTGGGAACATTGTAGCTGTTTCTGTGTTTTTTCTTACCT
TGTAGTCTGGTTCTGAATTACGAGAGGAAAAAAAAAGTAATTATGATACATTGTAGTTTGTGTA
CGATATATGTTGATAACGTTTTATTAAAGGGACATCTTTTTTCCGCA

hide sequence

RefSeq Acc Id:

XM_013521664 ⟹ XP_013377118

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,901,150 - 5,049,341 (+)	NCBI

Sequence:

show sequence

GCGGCGGCGGCGGCAGCGGGGCTGGAGGCGCGGAGGGCGGCGCGGGCCGGGCGGGCTGCGGGCG
AGCGAGCTAGCGGGCGAGCGGCGGGCAGCCGGGCGAGCGGCGGCGCAGCGAGGCCGAGCCGGCG
CGGGAGGAGTTCCAGGGCGATGGGGCCGCGGCCCGGGCTGACGCTTTGACAGCTGGAGAGAGCG
CGGAGCCAGCGCCGGAGGGAGGGAGCGCGGCGGGCGAGCGGGCGAACGCCGGGAGGGGGCCGGG
AGCGGGCGGCGCGGGGCAGCCGGACGGTAGCGGCGGCGGCGGCGGCGGGGCTCGGCGCCCTCCT
CTCTGCAGACCATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGACGGGCAGGCTCGGGA
AAAGTTAGCTTTATACGTCTACGAATACTTACTGCATGTAGGAGCACAGAAATCTGCACAGACC
TTCTTGTCAGAGATTCGATGGGAAAAAAACATCACGCTGGGAGAGCCGCCTGGGTTTCTGCACT
CATGGTGGTGTGTATTTTGGGACCTTTACTGTGCAGCTCCTGAAAGGAGAGACACTTGTGAACA
TTCAAGTGAAGCAAAAGCCTTTCACGATTATAGTGCAGCAGCTGCCCCGAGCCCCGTGCTTGGC
AACATTCCTCCCAACGATGGGATGCCCGGAGGCCCCATCCCGCCGGGTTTCTTTCAGCCTTTTA
TGTCACCGCGATACGCAGGCGGCCCCAGGCCCCCGATCAGAATGGGAAACCAGCCGCCAGGAGG
AGTTCCTGGGACACAGCCATTGCTGCCCAATTCCATGGATCCCACACGACAGCAAGGCCACCCC
AACATGGGAGGATCAATGCAGAGGATGAACCCTCCCCGAGGCATGGGGCCCATGGGTCCTGGCC
CACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGCCCCGCCATGCCCGGGAT
TAACATGGGCCCGGGAGCTGGCAGACCCTGGCCCAATCCCAACAGTGCTAACTCAATTCCATAC
TCCTCCTCATCGCCTGGCACCTACGTGGGACCCCCCGGAGGTGGCGGCCCTCCAGGAACACCCA
TCATGCCTAGTCCTGCAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCGGT
GCCGCCCGGAGGCAGCCGGTCCAACTTCCCGATGGGTCCTGGCTCGGACGGCCCCATGGGAGGC
ATGGGCGGCATGGAGCCACACCACATGAATGGATCCTTAGGATCAGGCGACATAGATGGACTTC
CAAAAAATTCTCCTAACAACATAAGTGGCATTAGCAATCCTCCAGGCACCCCTCGGGACGACAG
CGAGCTCGGAGGGAACTTCCTCCACTCCTTTCAGAACGACAACTATTCTCCAAGCATGACGATG
AGTGTGTGACCCCCTTCTCCAGGAAGCTGAGAGAGCCAGCCTTGCAGGCGGGAAGATACCAGGA
ATTATGCAAGAAGTGAGGTGTCATTACCAGGAGCTGGGGAGGGCGCCTCCCCACTCTCCTCAAC
CCTCTCCTCCACATCCCACCTTCCCCAATTTTAGTTTCATGCAATAAAAAGGCTGAACTTTTTA
TTCCATAAAACATGAAGGACAAAACTCAAAAATATATTTCAAGTCAACGACCTGGAAAACCCCC
ACCCCTTGCCCTTTCCCAAAAGGAACTTTTCTGTACATGACACTTTTTTGTTGTTGTTTTTTGT
TTGTTTGTTTGGGGTTTTACTGTTGCTGGGATTTTTTTTTTTTTTTTTTTTAAATTTGTTTTCA
GGAGGGATTTCTTTGGGAAAAAATTTTAAAAATGGAAGCTTCTAGCAAGCCCCCCACCTCAGCC
AGCCTCTTGCTTTCTTTAAAAAAAAAAAAAAAAAAGGAAAAAAGAAGAAAAGAAACCACAAGCC
CTGCTGTCTATCTGCCCCCAAGCCCTACCACCAGGAAAGCTAGTCTAGGTGTGAGATGCCACAC
TGTCTTTGTAGCCATCTAAAAATAATAATAATGAACTGGACAGTTTACAATCCGTAGTTTCTTT
AAAAAAGCCTTTTGGGGAAGGAAACGAAAGGAAGCCGCCCTTCTCTGCTTGGGGATTTCGGTTT
GTGGGACAGCAGGGGCGGACAGGAACCTGCTTTGTTTTGGCCTTGCTGGCAACAGCAGCACACC
TGGACCTCTGGACACAGCCCATCCTGTGGCCCCTGACCGACCTCCTCCGGGACTCCTGTGGTCG
CCGCTGCTGTGACCTGACCGGCGCATGCACTGTGTCCCCAGGACGGCCTCCTCTCCCTCCTGGG
CCTCCTTCCTGGCCGCCGCCTCCAGGCCTCCGCAGCCGTGCCCTGGCCTCCCAGCGAGAATCCT
GCCCGCCGGGTGGTGGCCCTGAGCAGAGCAGGTGAGGCCACCACCAACAGGATGGCTATGACCT
GGGACTTGGAAACCACGACCTCTGCGTTCTGGGCCCGAGATATTGCATTGTCGCTCTGTGCACA
GGCAGGGTGGGCTGGAATCTGGGTTTCTTTCTTTTTTTTCCTCCTTTTTTCTCTCCTCTTTATT
TGCCCTCCTTTCTCAAAGATGGGCTGTTGACCAGAATTGCTCTGTAAATGCTTGGAACTGGATG
GAAGACTTCAGCATAGCTGTGGGGGGTGGGGGGGAGCACCAGAAACCAAACAGACGTGCTGTTT
CCAGTCCTGTTTTTATTTTCAAAAACCGATGAACCCGACGGTGGAGCCTATCCCCTCCTAGGAG
GGGTGACTCATGACACCTCACCCCCCTGGAAACCTTTGTGTCTCGCCCTGGAAGACACCAAATT
CTTTGTACATTTACACTCCCCTCTCCTCCTCCCTACCCCTGTAGCTGGTCTTTGTTTTATTACC
GCCCCTTTCTGATCCATGTATATCATATTATGTGAGATACCATCTGCCTGAAAAAAGACCTTGT
GCGGATTATTGGGAACATTGTAGCTGTTTCTGTGTTTTTTCTTACCTTGTAGTCTGGTTCTGAA
TTACGAGAGGAAAAAAAAAGTAATTATGATACATTGTAGTTTGTGTACGATATATGTTGATAAC
GTTTTATTAAAGGGACATCTTTTTTCCGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005398585	(Get FASTA)	NCBI Sequence Viewer
	XP_013377118	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_005398585 ⟸ XM_005398528

- Peptide Label:

isoform X1

- Sequence:

show sequence

MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWC
VFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQGPPGSQ
PSPHAQPPPHNPSSMMGPHSQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQG
HPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSI
PYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPM
GGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDSELGGNFLHSFQNDNYSPSM
TMSV

hide sequence

RefSeq Acc Id:

XP_013377118 ⟸ XM_013521664

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWC
VFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPR
YAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNY
GSGMRPPPNSLGPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPS
PADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNS
PNNISGISNPPGTPRDDSELGGNFLHSFQNDNYSPSMTMSV

hide sequence

RefSeq Acc Id:

ENSCLAP00000023013 ⟸ ENSCLAT00000023230

RefSeq Acc Id:

ENSCLAP00000023014 ⟸ ENSCLAT00000023231

RefSeq Acc Id:

ENSCLAP00000023012 ⟸ ENSCLAT00000023229

Protein Domains

LisH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015795	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCLAP00000023012	ENTREZGENE
	ENSCLAP00000023012.1	UniProtKB/TrEMBL
	ENSCLAP00000023013.1	UniProtKB/TrEMBL
	ENSCLAP00000023014	ENTREZGENE
	ENSCLAP00000023014.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023229	ENTREZGENE
	ENSCLAT00000023229.1	UniProtKB/TrEMBL
	ENSCLAT00000023230.1	UniProtKB/TrEMBL
	ENSCLAT00000023231	ENTREZGENE
	ENSCLAT00000023231.1	UniProtKB/TrEMBL
InterPro	LisH	UniProtKB/TrEMBL
	SSDP_DNA-bd	UniProtKB/TrEMBL
NCBI Gene	Ssbp3	ENTREZGENE
PANTHER	SINGLE STRANDED DNA BINDING PROTEIN	UniProtKB/TrEMBL
	SINGLE-STRANDED DNA-BINDING PROTEIN 3	UniProtKB/TrEMBL
Pfam	SSDP	UniProtKB/TrEMBL
PRINTS	SSDNABINDING	UniProtKB/TrEMBL
PROSITE	LISH	UniProtKB/TrEMBL
UniProt	A0A8C2VZP2_CHILA	UniProtKB/TrEMBL
	A0A8C2W1X1_CHILA	UniProtKB/TrEMBL
	A0A8C2W7H5_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar