Cdh3 (cadherin 3) - Rat Genome Database

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Gene: Cdh3 (cadherin 3) Chinchilla lanigera
Analyze
Symbol: Cdh3
Name: cadherin 3
RGD ID: 8955627
Description: INVOLVED IN cell-cell adhesion (ortholog); hair cycle process (ortholog); keratinization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); congenital hypotrichosis with juvenile macular dystrophy (ortholog); ectodermal dysplasia, ectrodactyly, and macular dystrophy syndrome (ortholog); FOUND IN adherens junction (ortholog); cell junction (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin 3, type 1, P-cadherin (placental); cadherin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBIChiLan1.0ChiLan1.0
CDH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,645,310 - 68,733,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,636,189 - 68,727,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371668,679,213 - 68,734,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,236,277 - 67,290,443 (+)NCBINCBI36Build 36hg18NCBI36
Build 341667,236,276 - 67,290,442NCBI
Celera1653,187,169 - 53,242,286 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,551,120 - 54,605,916 (+)NCBIHuRef
CHM1_11670,086,362 - 70,141,056 (+)NCBICHM1_1
T2T-CHM13v2.01674,441,601 - 74,531,453 (+)NCBIT2T-CHM13v2.0
Cdh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,237,484 - 107,283,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,237,523 - 107,283,929 (+)EnsemblGRCm39 Ensembl
GRCm388106,510,852 - 106,556,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,034,791 - 109,080,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,400,020 - 109,446,037 (+)NCBIMGSCv36mm8
Celera8110,734,945 - 110,781,298 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.16NCBI
Cdh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,303,414 - 51,353,900 (+)NCBIGRCr8
mRatBN7.21934,393,596 - 34,444,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,393,727 - 34,444,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,209,266 - 41,259,606 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,862,587 - 41,912,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,161,722 - 44,212,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,668,957 - 38,719,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,669,230 - 38,719,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,536,859 - 49,587,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,343,823 - 36,393,819 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11936,395,654 - 36,397,989 (+)NCBI
Celera1933,820,490 - 33,870,862 (+)NCBICelera
Cytogenetic Map19q12NCBI
CDH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,185,107 - 78,242,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,096,426 - 84,153,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,408,078 - 68,465,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensemblpanpan1.1panPan2
CDH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,864,859 - 80,912,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,863,661 - 80,913,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,855,712 - 80,903,039 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,300,176 - 81,347,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,300,808 - 81,348,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,126,956 - 81,174,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,810,235 - 80,857,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,450,703 - 81,498,265 (-)NCBIUU_Cfam_GSD_1.0
Cdh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,634,712 - 40,682,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,906,493 - 18,955,072 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,191,664 - 18,235,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,190,971 - 18,236,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,844,456 - 16,853,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,717,600 - 58,775,033 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,717,597 - 58,775,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604721,455,596 - 21,513,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,616,940 - 17,658,548 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,616,296 - 17,659,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004595   ⟹   ENSCLAP00000004510
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)Ensembl
RefSeq Acc Id: XM_013503938   ⟹   XP_013359392
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359392 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004510
  ENSCLAP00000004510.1
Reference Protein Sequences
RefSeq Acc Id: XP_013359392   ⟸   XM_013503938
- UniProtKB: A0A8C2YK35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004510   ⟸   ENSCLAT00000004595
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004595 ENTREZGENE
  ENSCLAT00000004595.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Cadherin_pro_dom UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
NCBI Gene Cdh3 ENTREZGENE
PANTHER CADHERIN-3 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART Cadherin_pro UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A8C2YK35 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cdh3  cadherin 3    cadherin 3, type 1, P-cadherin (placental)  Symbol and/or name change 5135510 APPROVED