Pradc1 (protease associated domain containing 1)

Gene: Pradc1 (protease associated domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Pradc1

Name:

protease associated domain containing 1

RGD ID:

8954657

Description:

ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog); FOUND IN extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

protease-associated domain containing 1; protease-associated domain-containing protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,402,923 - 12,410,735 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,403,090 - 12,408,055 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alstrom syndrome (ISO)

congenital disorder of glycosylation type IIb (ISO)

dystonia (ISO)

genetic disease (ISO)

Methylmalonyl-CoA Epimerase Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular region (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Pradc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,402,923 - 12,410,735 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,403,090 - 12,408,055 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRADC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	73,228,006 - 73,233,284 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	73,228,010 - 73,233,239 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	73,455,134 - 73,460,412 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,308,642 - 73,313,864 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	73,366,790 - 73,372,011	NCBI
Celera	2	73,305,961 - 73,311,182 (-)	NCBI		Celera
Cytogenetic Map	2	p13.2	NCBI
HuRef	2	73,190,796 - 73,196,012 (-)	NCBI		HuRef
CHM1_1	2	73,385,941 - 73,391,163 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	73,240,995 - 73,246,273 (-)	NCBI		T2T-CHM13v2.0

Pradc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,423,767 - 85,428,969 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	85,423,792 - 85,428,952 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	85,446,785 - 85,451,987 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,446,810 - 85,451,970 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,396,779 - 85,401,964 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	85,412,443 - 85,416,941 (-)	NCBI		MGSCv36	mm8
Celera	6	87,418,724 - 87,423,912 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.46	NCBI

Pradc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,542,239 - 119,546,536 (-)	NCBI		GRCr8
mRatBN7.2	4	117,984,732 - 117,989,710 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	117,984,742 - 117,989,886 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	4	117,230,523 - 117,235,496 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,230,528 - 117,234,928 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	181,808,138 - 181,812,927 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	4	106,966,767 - 106,971,740 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

PRADC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	53,147,378 - 53,152,725 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	53,150,128 - 53,155,459 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	73,280,791 - 73,286,879 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	74,769,555 - 74,775,787 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	74,769,555 - 74,775,787 (-)	Ensembl	panpan1.1		panPan2

PRADC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	49,633,772 - 49,649,450 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	49,633,769 - 49,637,708 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	49,280,378 - 49,296,063 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	50,499,701 - 50,515,384 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	50,499,745 - 50,503,892 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	49,515,985 - 49,531,667 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	49,582,857 - 49,598,539 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	50,141,832 - 50,157,514 (+)	NCBI		UU_Cfam_GSD_1.0

Pradc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	11,554,537 - 11,559,293 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	17,009,723 - 17,016,784 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	17,011,999 - 17,016,773 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRADC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,547,649 - 69,555,085 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	69,546,838 - 69,552,014 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,750,448 - 72,755,320 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRADC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	33,940,270 - 33,945,380 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666045	78,137,353 - 78,143,144 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pradc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	410,216 - 415,814 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	410,201 - 415,820 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005385569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01024604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01155799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000022541 ⟹ ENSCLAP00000022336

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955424	12,402,923 - 12,410,735 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000022542 ⟹ ENSCLAP00000022337

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955424	12,403,194 - 12,407,204 (+)	Ensembl

RefSeq Acc Id:

XM_005385569 ⟹ XP_005385626

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	12,403,090 - 12,408,055 (+)	NCBI

Sequence:

show sequence

CGGGTCTGGGGGCGGGAGGCCGGAGCAGCTGTCAGGCTAAAGTCCGGCGAGCTTCGCTCTGCTG
GACAGCAGGAGGAAGTGCGGCGCGGGGCCGGGCCCTGGAGATGGTCCCCGGCGCCCCGTGCTGG
TGTTTTCTGGTGTTCTGGCTGCCCGCGTGCGTCGCGGCCCACGGCTTACGCATCCATGATTATT
TGTACTTTCAAGTGCTGAGTCCTGGGGACATTCGATACATCTTCACAGCCACACCTGCCAAGGA
CTTCGGTGGTATCTTTCACACGAGGTATGAACAGATTCACCTTGTCCCTGCTGAACCTCCAGAG
GCCTGTGGGGAACTCAGCAACGGTTTCTTCATTCAGGACCAAATCGCTCTGGTGGAGAGGGGGG
GCTGCTCTTTCCTCTCTAAGACCCGAGTGGTACAGGAGCATGGTGGGCGGGCAGTGATCATCTC
TGACAATGCAGTTGACAACGACAGCTTCTATGTGGAAATGATCCAGGACAGTACCCAGCGCACG
GCTGACATTCCTGCCCTCTTCCTGCTCGGCCGAGATGGCTACATGATCCGTCGCTCTCTGGAAC
AGCATGGGTTGCCATGGGCCATCATTTCCATCCCAGTCAATGTCACCAGCATCCCCACCTTTGA
GCTGCTACAACCACCCTGGACCTTCTGGTAGATCTGGTCCCACATTCCAGCCTTAACTGACTCT
GGGCTGGGAAGGGGAAACCCACGAATTCTGCTATTTGGAATCTGGGGAGCACATCTGGGGACAA
GTGGAGCCAAGCACAGGGAAGAAAGCCACACCACTGGCTCTCCCTCACCAAGGCTCCTAAGGAC
ATCTTGTGCTACAGGAAGAGGCAAGAGCCAAGCTCCAGGGCTTCTGGCAGCAATCTAGAACAAA
AGGAGCTAGAGGCAGGCTACCTGAAAGCCACCTGTGACCTGTGACATTCCACCTGGTTCAACCT
ATCCAACCCACGGTCTCCTCACAGTGACCTTCATGGGAGTTGCTGGAGAGGTTTAAAGAATTGA
TGTCTGGGGACTCAATAAACCCTGACTTTTTAGCAATAAAGCTTCTCATCAGGGTTCTGTCTCC
TACAATAAGGATACACAGGTGTGGGGTTTCCAGACTTACTCTTCTGGTCCCAAACCATCATTTT
GAGGAAAAACAATTGAGGTCCAATCACTTTCCCTAGATTCTTTAGGACCAATGCTCAGGCTGTT
GGATCTCAATGCAGCCCCCTGCTGAAGAGATCAGGAAGCCCCCAGAAAGCTGTAGTTCAGCTCC
TTGGGAAGAAGGATCATCTTGTAGCCTAGTGCTGGGGTCAAAACCAGGCTTCAGCAGATCTTTA
TTCTGACTTTAGGAACATTTGCACAGCAAAGTGTGGCTGAAACAAGAGGTGAGCATAGCTGGGG
ACTGTAGCTCCCATCTGCTGTCATCACGTAGTCTAGCTTGTGTCCCTTTGCACCTAACCTCTAT
GACTGCTGGGAGCCCTGTCCAGCTGTTCTCCATAAAACAATCTTACAAAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005385626	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022336
	ENSCLAP00000022336.1
	ENSCLAP00000022337.1

RefSeq Acc Id:	XP_005385626 ⟸ XM_005385569
- UniProtKB:	A0A8C2VYI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVPGAPCWCFLVFWLPACVAAHGLRIHDYLYFQVLSPGDIRYIFTATPAKDFGGIFHTRYEQIH LVPAEPPEACGELSNGFFIQDQIALVERGGCSFLSKTRVVQEHGGRAVIISDNAVDNDSFYVEM IQDSTQRTADIPALFLLGRDGYMIRRSLEQHGLPWAIISIPVNVTSIPTFELLQPPWTFW hide sequence

RefSeq Acc Id:

ENSCLAP00000022337 ⟸ ENSCLAT00000022542

RefSeq Acc Id:

ENSCLAP00000022336 ⟸ ENSCLAT00000022541

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015320	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022541	ENTREZGENE
	ENSCLAT00000022541.1	UniProtKB/TrEMBL
	ENSCLAT00000022542.1	UniProtKB/TrEMBL
Gene3D-CATH	3.50.30.30	UniProtKB/TrEMBL
InterPro	PA_dom_sf	UniProtKB/TrEMBL
	PA_domain	UniProtKB/TrEMBL
	PRADC1-like_PA	UniProtKB/TrEMBL
NCBI Gene	Pradc1	ENTREZGENE
PANTHER	PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR22702	UniProtKB/TrEMBL
Pfam	PF02225	UniProtKB/TrEMBL
Superfamily-SCOP	PA domain	UniProtKB/TrEMBL
UniProt	A0A8C2VYI5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YTK9_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Pradc1	protease associated domain containing 1		protease-associated domain containing 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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