Pld2 (phospholipase D2) - Rat Genome Database

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Gene: Pld2 (phospholipase D2) Chinchilla lanigera
Analyze
Symbol: Pld2
Name: phospholipase D2
RGD ID: 8954543
Description: ENCODES a protein that exhibits phospholipase D activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN G protein-coupled receptor internalization (ortholog); neuron projection development (ortholog); phospholipid catabolic process (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; glycerophospholipid metabolic pathway; mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN brush border membrane (ortholog); caveola (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,239,177 - 10,250,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,239,177 - 10,250,516 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Pld2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546710,239,177 - 10,250,890 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546710,239,177 - 10,250,516 (+)NCBIChiLan1.0ChiLan1.0
PLD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl174,807,152 - 4,823,434 (+)EnsemblGRCh38hg38GRCh38
GRCh38174,807,152 - 4,823,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37174,710,447 - 4,726,725 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36174,657,378 - 4,673,694 (+)NCBINCBI36hg18NCBI36
Build 34174,657,391 - 4,673,694NCBI
Celera174,725,830 - 4,742,140 (+)NCBI
Cytogenetic Map17p13.2NCBI
HuRef174,598,848 - 4,615,181 (+)NCBIHuRef
CHM1_1174,719,366 - 4,735,679 (+)NCBICHM1_1
Pld2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,430,318 - 70,448,936 (+)NCBIGRCm39mm39
GRCm39 Ensembl1170,430,890 - 70,448,936 (+)Ensembl
GRCm381170,539,492 - 70,558,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,540,064 - 70,558,110 (+)EnsemblGRCm38mm10GRCm38
MGSCv371170,353,666 - 70,371,612 (+)NCBIGRCm37mm9NCBIm37
MGSCv361170,356,359 - 70,374,305 (+)NCBImm8
Celera1178,088,483 - 78,106,417 (+)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.99NCBI
Pld2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21055,256,326 - 55,274,192 (+)NCBI
Rnor_6.0 Ensembl1057,163,174 - 57,179,730 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01057,161,921 - 57,181,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01056,908,891 - 56,926,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41057,388,474 - 57,439,063 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11057,402,096 - 57,452,684 (+)NCBI
Celera1054,402,188 - 54,419,867 (+)NCBICelera
Cytogenetic Map10q24NCBI
PLD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1174,843,095 - 4,858,991 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl174,843,217 - 4,858,425 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0174,853,919 - 4,870,254 (+)NCBIMhudiblu_PPA_v0panPan3
PLD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1531,755,881 - 31,767,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl531,756,433 - 31,767,066 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha531,895,467 - 31,907,045 (-)NCBI
ROS_Cfam_1.0531,861,137 - 31,872,703 (-)NCBI
UMICH_Zoey_3.1531,827,405 - 31,838,971 (-)NCBI
UNSW_CanFamBas_1.0531,787,088 - 31,798,653 (-)NCBI
UU_Cfam_GSD_1.0531,963,496 - 31,975,051 (-)NCBI
Pld2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560253,017,042 - 53,030,311 (+)NCBI
SpeTri2.0NW_0049366772,870,664 - 2,883,545 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,073,896 - 52,087,809 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,073,913 - 52,087,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21254,192,761 - 54,204,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,283,248 - 4,298,034 (+)NCBI
ChlSab1.1 Ensembl164,283,521 - 4,298,632 (+)Ensembl
Vero_WHO_p1.0NW_02366605917,339,077 - 17,355,649 (-)NCBI
Pld2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247868,690,968 - 8,702,213 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012900   ⟹   ENSCLAP00000012752
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546710,239,177 - 10,250,890 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000012901   ⟹   ENSCLAP00000012753
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546710,239,466 - 10,250,890 (+)Ensembl
RefSeq Acc Id: XM_005399602   ⟹   XP_005399659
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546710,239,177 - 10,250,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522221   ⟹   XP_013377675
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546710,239,466 - 10,250,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522222   ⟹   XP_013377676
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546710,239,466 - 10,250,516 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399659 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377675 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377676 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005399659   ⟸   XM_005399602
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013377675   ⟸   XM_013522221
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013377676   ⟸   XM_013522222
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000012753   ⟸   ENSCLAT00000012901
RefSeq Acc Id: ENSCLAP00000012752   ⟸   ENSCLAT00000012900


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008805 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000012752 ENTREZGENE
Ensembl Transcript ENSCLAT00000012900 ENTREZGENE
NCBI Gene Pld2 ENTREZGENE