Spta1 (spectrin alpha, erythrocytic 1) - Rat Genome Database

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Gene: Spta1 (spectrin alpha, erythrocytic 1) Chinchilla lanigera
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Symbol: Spta1
Name: spectrin alpha, erythrocytic 1
RGD ID: 8953204
Description: INVOLVED IN actin cytoskeleton organization (ortholog); hemopoiesis (ortholog); lymphocyte homeostasis (ortholog); ASSOCIATED WITH anemia (ortholog); autoimmune interstitial lung, joint, and kidney disease (ortholog); congenital hemolytic anemia (ortholog); FOUND IN axon (ortholog); cortical cytoskeleton (ortholog); cuticular plate (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spectrin alpha chain, erythrocytic 1; spectrin, alpha, erythrocytic 1; spectrin, alpha, erythrocytic 1 (elliptocytosis 2)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546810,472,671 - 10,545,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546810,472,601 - 10,545,402 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spta1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546810,472,671 - 10,545,313 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546810,472,601 - 10,545,402 (-)NCBIChiLan1.0ChiLan1.0
SPTA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381158,610,704 - 158,686,715 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1158,610,704 - 158,686,715 (-)EnsemblGRCh38hg38GRCh38
GRCh371158,580,494 - 158,656,505 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,847,120 - 156,923,130 (-)NCBINCBI36Build 36hg18NCBI36
Build 341155,393,568 - 155,469,561NCBI
Celera1131,651,547 - 131,727,219 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1129,938,262 - 130,013,934 (-)NCBIHuRef
CHM1_11159,976,850 - 160,052,530 (-)NCBICHM1_1
T2T-CHM13v2.01157,747,803 - 157,823,815 (-)NCBIT2T-CHM13v2.0
Spta1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,000,305 - 174,076,015 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1174,000,342 - 174,076,016 (+)EnsemblGRCm39 Ensembl
GRCm381174,172,739 - 174,248,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,172,776 - 174,248,450 (+)EnsemblGRCm38mm10GRCm38
MGSCv371176,102,907 - 176,178,580 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,009,543 - 176,084,742 (+)NCBIMGSCv36mm8
MGSCv361175,481,229 - 175,556,592 (+)NCBIMGSCv36mm8
Celera1181,280,976 - 181,363,312 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.97NCBI
Spta1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,735,833 - 88,811,697 (+)NCBIGRCr8
mRatBN7.21386,203,504 - 86,279,371 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1386,203,504 - 86,279,371 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1388,714,968 - 88,786,574 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01390,115,246 - 90,186,848 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01387,299,995 - 87,371,589 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01392,264,231 - 92,340,091 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1392,264,231 - 92,340,083 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01396,782,387 - 96,860,327 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41389,951,924 - 90,028,592 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11390,140,807 - 90,217,468 (+)NCBI
Celera1385,806,253 - 85,882,378 (+)NCBICelera
Cytogenetic Map13q24NCBI
SPTA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2191,161,251 - 91,236,695 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,905,096 - 90,980,575 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01133,969,717 - 134,045,301 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11137,760,188 - 137,836,131 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,760,942 - 137,835,927 (-)Ensemblpanpan1.1panPan2
SPTA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,052,046 - 23,118,933 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3823,051,563 - 23,118,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3823,074,219 - 23,141,493 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03823,183,707 - 23,251,018 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3823,183,635 - 23,250,966 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13822,946,752 - 23,013,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,481,482 - 23,548,479 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,912,752 - 23,979,956 (+)NCBIUU_Cfam_GSD_1.0
Spta1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050584,995,049 - 5,068,389 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367401,686,218 - 1,759,078 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367401,686,218 - 1,759,083 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl491,485,067 - 91,640,063 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1491,573,470 - 91,640,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2499,567,778 - 99,634,336 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPTA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,238,246 - 5,314,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl205,238,447 - 5,313,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660384,407,178 - 4,482,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spta1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247942,639,039 - 2,714,591 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247942,638,605 - 2,715,934 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000019522   ⟹   ENSCLAP00000019333
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546810,472,671 - 10,545,313 (-)Ensembl
RefSeq Acc Id: XM_013522277   ⟹   XP_013377731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546810,472,601 - 10,545,402 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377731 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019333
  ENSCLAP00000019333.1
RefSeq Acc Id: XP_013377731   ⟸   XM_013522277
- UniProtKB: A0A8C2VW96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019333   ⟸   ENSCLAT00000019522
Protein Domains
EF-hand   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013250 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000019522 ENTREZGENE
  ENSCLAT00000019522.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF-hand_Ca_insen UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene Spta1 ENTREZGENE
PANTHER SPECTRIN ALPHA CHAIN, ERYTHROCYTIC 1 UniProtKB/TrEMBL
  SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/TrEMBL
Pfam EFhand_Ca_insen UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
PRINTS SPECTRNALPHA UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART efhand_Ca_insen UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP Spectrin repeat UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C2VW96 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Spta1  spectrin alpha, erythrocytic 1    spectrin, alpha, erythrocytic 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Spta1  spectrin, alpha, erythrocytic 1    spectrin, alpha, erythrocytic 1 (elliptocytosis 2)  Symbol and/or name change 5135510 APPROVED