Pip4p2 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2) - Rat Genome Database

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Gene: Pip4p2 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2) Chinchilla lanigera
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Symbol: Pip4p2
Name: phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
RGD ID: 8952718
Description: ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (ortholog); INVOLVED IN negative regulation of phagocytosis (ortholog); phosphatidylinositol dephosphorylation (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tmem55a; transmembrane protein 55A; type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554177,771,218 - 7,825,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554177,769,365 - 7,825,892 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Pip4p2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554177,771,218 - 7,825,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554177,769,365 - 7,825,892 (-)NCBIChiLan1.0ChiLan1.0
PIP4P2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38890,993,802 - 91,040,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl890,993,802 - 91,040,872 (-)EnsemblGRCh38hg38GRCh38
GRCh37892,006,030 - 92,053,087 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36892,075,675 - 92,122,227 (-)NCBINCBI36hg18NCBI36
Celera888,201,253 - 88,248,229 (-)NCBI
Cytogenetic Map8q21.3NCBI
HuRef887,216,426 - 87,263,709 (-)NCBIHuRef
CHM1_1892,047,148 - 92,093,868 (-)NCBICHM1_1
T2T-CHM13v2.0892,118,724 - 92,165,782 (-)NCBI
Pip4p2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39414,864,219 - 14,915,501 (+)NCBIGRCm39mm39
GRCm39 Ensembl414,864,076 - 14,915,176 (+)Ensembl
GRCm38414,864,219 - 14,915,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl414,864,076 - 14,915,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv37414,791,366 - 14,842,407 (+)NCBIGRCm37mm9NCBIm37
MGSCv36414,791,366 - 14,842,407 (+)NCBImm8
Celera414,666,242 - 14,716,763 (+)NCBICelera
Cytogenetic Map4A1NCBI
Pip4p2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2528,259,821 - 28,307,225 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl528,259,760 - 28,307,225 (+)Ensembl
Rnor_6.0528,395,517 - 28,442,924 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl528,395,296 - 28,442,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0533,079,533 - 33,126,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4529,329,329 - 29,376,733 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1529,329,328 - 29,376,729 (+)NCBI
Celera527,511,708 - 27,556,541 (+)NCBICelera
Cytogenetic Map5q13NCBI
PIP4P2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1889,610,315 - 89,640,736 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl889,611,726 - 89,639,419 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0887,657,202 - 87,704,355 (-)NCBIMhudiblu_PPA_v0panPan3
PIP4P2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12936,376,211 - 36,410,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2936,377,413 - 36,419,132 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2936,528,349 - 36,584,476 (-)NCBI
ROS_Cfam_1.02936,577,248 - 36,633,018 (-)NCBI
UMICH_Zoey_3.12936,597,823 - 36,653,297 (-)NCBI
UNSW_CanFamBas_1.02936,579,206 - 36,635,139 (-)NCBI
UU_Cfam_GSD_1.02937,017,626 - 37,073,778 (-)NCBI
Pip4p2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,122,960 - 43,172,916 (+)NCBI
SpeTri2.0NW_0049365444,621,222 - 4,669,808 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIP4P2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl445,826,326 - 45,892,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1445,825,415 - 45,891,192 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2449,447,375 - 49,512,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIP4P2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1886,059,522 - 86,111,027 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl886,059,397 - 86,107,014 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603954,723,306 - 54,803,988 (+)NCBIVero_WHO_p1.0
Pip4p2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624744924,211 - 978,625 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014890   ⟹   ENSCLAP00000014731
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554177,771,218 - 7,825,799 (-)Ensembl
RefSeq Acc Id: XM_013512854   ⟹   XP_013368308
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554177,769,365 - 7,825,892 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368308 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013368308   ⟸   XM_013512854
- Sequence:
RefSeq Acc Id: ENSCLAP00000014731   ⟸   ENSCLAT00000014890


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000014731 ENTREZGENE
  ENSCLAP00000014731.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014890 ENTREZGENE
  ENSCLAT00000014890.1 UniProtKB/TrEMBL
InterPro PtdIns-P2-Ptase UniProtKB/TrEMBL
NCBI Gene Tmem55a ENTREZGENE
PANTHER PTHR21014 UniProtKB/TrEMBL
Pfam Tmemb_55A UniProtKB/TrEMBL
UniProt A0A8C2VLU4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-25 Pip4p2  phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2  Tmem55a  transmembrane protein 55A  Symbol and/or name change 5135510 APPROVED