Il6st (interleukin 6 cytokine family signal transducer) - Rat Genome Database

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Gene: Il6st (interleukin 6 cytokine family signal transducer) Chinchilla lanigera
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Symbol: Il6st
Name: interleukin 6 cytokine family signal transducer
RGD ID: 8950071
Description: ENCODES a protein that exhibits ciliary neurotrophic factor receptor activity (ortholog); ciliary neurotrophic factor receptor binding (ortholog); growth factor binding (ortholog); INVOLVED IN ciliary neurotrophic factor-mediated signaling pathway (ortholog); cytokine-mediated signaling pathway (ortholog); glycogen metabolic process (ortholog); PARTICIPATES IN interleukin-27 signaling pathway; interleukin-6 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cell body (ortholog); ciliary neurotrophic factor receptor complex (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: interleukin 6 signal transducer; interleukin 6 signal transducer (gp130, oncostatin M receptor); interleukin-6 receptor subunit beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544611,790,444 - 11,835,001 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544611,790,636 - 11,837,734 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Il6st
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544611,790,444 - 11,835,001 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544611,790,636 - 11,837,734 (+)NCBIChiLan1.0ChiLan1.0
IL6ST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl555,935,095 - 55,995,022 (-)EnsemblGRCh38hg38GRCh38
GRCh38555,935,095 - 55,994,963 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37555,230,923 - 55,290,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36555,272,451 - 55,326,520 (-)NCBINCBI36hg18NCBI36
Build 34555,272,451 - 55,326,520NCBI
Celera552,184,738 - 52,244,652 (-)NCBI
Cytogenetic Map5q11.2NCBI
HuRef552,204,630 - 52,264,547 (-)NCBIHuRef
CHM1_1555,234,877 - 55,294,748 (-)NCBICHM1_1
Il6st
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,600,604 - 112,643,394 (+)NCBIGRCm39mm39
GRCm39 Ensembl13112,600,604 - 112,646,620 (+)Ensembl
GRCm3813112,464,070 - 112,506,860 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,464,070 - 112,510,086 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,254,278 - 113,297,068 (+)NCBIGRCm37mm9NCBIm37
MGSCv3613113,584,987 - 113,627,719 (+)NCBImm8
Celera13116,768,393 - 116,811,051 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.73NCBI
Il6st
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,065,979 - 44,106,255 (+)NCBI
Rnor_6.0 Ensembl244,289,393 - 44,314,944 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0244,279,199 - 44,319,427 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0263,320,957 - 63,361,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4243,806,301 - 43,842,365 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1243,736,911 - 43,762,480 (+)NCBI
Celera239,857,022 - 39,886,283 (+)NCBICelera
Cytogenetic Map2q14NCBI
IL6ST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1559,650,833 - 59,708,817 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl559,669,606 - 59,708,817 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0558,023,704 - 58,081,895 (+)NCBIMhudiblu_PPA_v0panPan3
IL6ST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,214,050 - 43,273,014 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,214,050 - 43,248,124 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha240,260,413 - 40,306,615 (-)NCBI
ROS_Cfam_1.0243,679,923 - 43,738,936 (-)NCBI
UMICH_Zoey_3.1240,758,131 - 40,804,315 (-)NCBI
UNSW_CanFamBas_1.0241,560,510 - 41,606,926 (-)NCBI
UU_Cfam_GSD_1.0242,380,727 - 42,426,940 (-)NCBI
Il6st
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213202,931,083 - 202,977,366 (+)NCBI
SpeTri2.0NW_00493648011,867,573 - 11,913,563 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL6ST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1635,101,304 - 35,211,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11635,101,304 - 35,151,832 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21637,476,140 - 37,522,638 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IL6ST
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1452,174,893 - 52,232,475 (-)NCBI
ChlSab1.1 Ensembl452,174,312 - 52,214,584 (-)Ensembl
Vero_WHO_p1.0NW_0236660491,050,897 - 1,108,503 (-)NCBI
Il6st
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247593,258,324 - 3,315,265 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009368   ⟹   ENSCLAP00000009239
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544611,790,444 - 11,835,001 (+)Ensembl
RefSeq Acc Id: XM_005392688   ⟹   XP_005392745
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544611,790,636 - 11,837,734 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392745 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005392745   ⟸   XM_005392688
- Sequence:
RefSeq Acc Id: ENSCLAP00000009239   ⟸   ENSCLAT00000009368


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006431 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009239 ENTREZGENE
Ensembl Transcript ENSCLAT00000009368 ENTREZGENE
NCBI Gene Il6st ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Il6st  interleukin 6 cytokine family signal transducer  Il6st  interleukin 6 signal transducer  Symbol and/or name change 5135510 APPROVED
2015-08-25 Il6st  interleukin 6 signal transducer    interleukin 6 signal transducer (gp130, oncostatin M receptor)  Symbol and/or name change 5135510 APPROVED