Snx22 (sorting nexin 22) - Rat Genome Database

Name: Snx22
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Snx22 (sorting nexin 22) Chinchilla lanigera

Analyze

Symbol:

Snx22

Name:

sorting nexin 22

RGD ID:

8949998

Description:

ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-22

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX22 (sorting nexin 22)	NCBI	Ortholog
Mus musculus (house mouse):	Snx22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx22 (sorting nexin 22)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,246,817 - 11,248,874 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,246,817 - 11,248,870 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

nemaline myopathy 6 (ISO)

osteogenesis imperfecta (ISO)

osteogenesis imperfecta type 9 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Snx22
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	11,246,817 - 11,248,874 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	11,246,817 - 11,248,870 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX22
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	64,151,731 - 64,157,481 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	64,151,715 - 64,157,481 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	64,443,930 - 64,449,680 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	62,230,969 - 62,236,733 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	62,230,968 - 62,234,644	NCBI
Celera	15	41,322,905 - 41,328,625 (+)	NCBI		Celera
Cytogenetic Map	15	q22.31	NCBI
HuRef	15	41,268,456 - 41,274,383 (+)	NCBI		HuRef
CHM1_1	15	64,563,446 - 64,569,209 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	61,958,907 - 61,964,657 (+)	NCBI		T2T-CHM13v2.0

Snx22
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	65,972,456 - 65,977,041 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	65,972,458 - 65,977,001 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	66,065,174 - 66,069,759 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	66,065,176 - 66,069,719 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	65,912,983 - 65,917,538 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	65,863,182 - 65,867,737 (-)	NCBI		MGSCv36	mm8
Celera	9	63,300,719 - 63,305,274 (-)	NCBI		Celera
Cytogenetic Map	9	C	NCBI
cM Map	9	35.69	NCBI

Snx22
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	75,503,297 - 75,509,271 (-)	NCBI		GRCr8
mRatBN7.2	8	66,609,914 - 66,612,932 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	66,609,970 - 66,612,850 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	72,122,517 - 72,125,404 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	70,395,578 - 70,398,465 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	68,265,401 - 68,268,289 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	71,725,405 - 71,728,729 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	71,725,771 - 71,728,685 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	71,394,344 - 71,398,200 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	70,349,556 - 70,352,436 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	70,368,802 - 70,371,432 (-)	NCBI
Celera	8	65,999,930 - 66,002,810 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

SNX22
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	53,407,220 - 53,413,028 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	57,581,537 - 57,587,350 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	43,103,990 - 43,109,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	61,396,185 - 61,401,937 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	61,396,185 - 61,401,937 (+)	Ensembl	panpan1.1		panPan2

SNX22
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	28,650,854 - 28,655,780 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	28,650,948 - 28,653,799 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	28,570,107 - 28,575,025 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	28,827,017 - 28,831,944 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	28,761,129 - 28,766,048 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	28,823,420 - 28,828,329 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	29,062,616 - 29,067,538 (+)	NCBI		UU_Cfam_GSD_1.0

Snx22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	106,782,254 - 106,787,719 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	24,630,428 - 24,633,702 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	24,630,337 - 24,633,281 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX22
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	107,891,699 - 107,897,529 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	107,891,698 - 107,897,561 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SNX22
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	19,383,558 - 19,386,664 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	19,383,812 - 19,386,568 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	122,001,824 - 122,005,009 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx22
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624781	8,408,346 - 8,411,003 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624781	8,406,921 - 8,410,942 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013519037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001235925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01042652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01150804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDK01011077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000012485 ⟹ ENSCLAP00000012342

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955450	11,246,817 - 11,248,874 (-)	Ensembl

RefSeq Acc Id:

XM_013519037 ⟹ XP_013374491

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	11,246,817 - 11,248,870 (-)	NCBI

Sequence:

show sequence

CGGGGCTTTGCGGGGGCGGGGCCCGCGCGGGGTCTGTGTAGACTCCCGGAGTCGCGCCTCTGAG
AGCGCGCCTGGAGGGGCGGCGGCCGGGCGCGGATGCTGGAAGTTCACATCCCCTCGGTGGGGCC
GGAGGCCGAGGAGCCCAGGCAGAGCCCGGAGAAAGGCCACATGGTGTTCCGCGTGGAGGTGCGC
TGCCGCGGGCGGAGGCACTCGGTGCACAGGCGCTACAGCGAGTTCCACGCGCTGCACAAGCGGA
TCAAGAAACTGTACAAAGTGCCTGACTTCCCGTCGAAGCGCCTGCCCAACTGGAGGACCAGGAG
CCTGGAACAGCGGCGGCAGGGGCTGGAGGCCTATATCCAGGGTATCCTGTACCTGAACCAAGAT
GTGCCCAAGGAGTTACTGGAATTCCTGAGACTCCGACACTTCCCCGTGGACCCCAAGGCCAGCA
GCTGGGGCACCCTGGGGGAATTCCTGCCTAGCGACGGCAGCAGCTCACAGCTGCACCATCGGCC
CATCGTCAGCTTCTGCAGGGATCCTTACCTGTGCGTCCCTTCCCCAGAGTCTCTGCCGGATGTG
GTGGTGAACGGTGTGCTCCAGGGCCTCTACGGATTCAGCGGCAGCCCAGCCCCAGCCCAGCCCC
AGGCTGACTGTAACCCTGCTCCTCTGCCACCCGTGCCCTAAGGAGTCTGGGAGCCTCTGGGGAG
GAGTCATGTGCCTCAGTTGTATGAGCACCACTCCAAGAACCAGGCCTGCGTCACCCTGTGGCCT
GGAGCCCGGACTCTACCATGCCTGGTCCCCATCAAGGCTCTGAACTCCACATGCGCTGGCAGCT
GGGGTGGTCTTAGCACCCAGGCAGATGGCAAGGGAGGGTGAGATGAGGAATAAAAGACAGACAA
TTTAGAGGTA

hide sequence

RefSeq Acc Id:

XM_013519038 ⟹ XP_013374492

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	11,246,817 - 11,248,870 (-)	NCBI

Sequence:

show sequence

CGGGGCTTTGCGGGGGCGGGGCCCGCGCGGGGTCTGTGTAGACTCCCGGAGTCGCGCCTCTGAG
AGCGCGCCTGGAGGGGCGGCGGCCGGGCGCGGATGCTGGAAGTTCACATCCCCTCGGTGGGGCC
GGAGGCCGAGGAGCCCAGGCAGAGCCCGGAGAAAGGCCACATGGTGTTCCGCGTGGAGGTGCGC
TGCCGCGGGCGGAGGCACTCGGTGCACAGGCGCTACAGCGAGTTCCACGCGCTGCACAAGCGGA
TCAAGAAACTGTACAAAGTGCCTGACTTCCCGTCGAAGCGCCTGCCCAACTGGAGGACCAGGAG
CCTGGAACAGCGGCGGCAGGGGCTGGAGGCCTATATCCAGGGTATCCTGTACCTGAACCAAGAT
GTGCCCAAGGAGTTACTGGAATTCCTGAGACTCCGACACTTCCCCGTGGACCCCAAGGCCAGCA
GCTGGGGCTCACAGCTGCACCATCGGCCCATCGTCAGCTTCTGCAGGGATCCTTACCTGTGCGT
CCCTTCCCCAGAGTCTCTGCCGGATGTGGTGGTGAACGGTGTGCTCCAGGGCCTCTACGGATTC
AGCGGCAGCCCAGCCCCAGCCCAGCCCCAGGCTGACTGTAACCCTGCTCCTCTGCCACCCGTGC
CCTAAGGAGTCTGGGAGCCTCTGGGGAGGAGTCATGTGCCTCAGTTGTATGAGCACCACTCCAA
GAACCAGGCCTGCGTCACCCTGTGGCCTGGAGCCCGGACTCTACCATGCCTGGTCCCCATCAAG
GCTCTGAACTCCACATGCGCTGGCAGCTGGGGTGGTCTTAGCACCCAGGCAGATGGCAAGGGAG
GGTGAGATGAGGAATAAAAGACAGACAATTTAGAGGTA

hide sequence

RefSeq Acc Id:

XR_001235925

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	11,247,147 - 11,248,870 (-)	NCBI

Sequence:

show sequence

CGGGGCTTTGCGGGGGCGGGGCCCGCGCGGGGTCTGTGTAGACTCCCGGAGTCGCGCCTCTGAG
AGCGCGCCTGGAGGGGCGGCGGCCGGGCGCGGATGCTGGAAGTTCACATCCCCTCGGTGGGGCC
GGAGGCCGAGGAGCCCAGGCAGAGCCCGGAGAAAGGCCACATGGTGTTCCGCGTGGAGGTGCGC
TGCCGCGGGCGGAGGCACTCGGTGCACAGGCGCTACAGCGAGTTCCACGCGCTGCACAAGCGGA
TCAAGAAACTGTACAAAGTGCCTGACTTCCCGTCGAAGCGCCTGCCCAACTGGAGGACCAGGAG
CCTGGAACAGCGGCGGCAGGGGCTGGAGGCCTATATCCAGGGTATCCTGTACCTGAACCAAGAT
GTGCCCAAGGAGTTACTGGAATTCCTGAGACTCCGACACTTCCCCGTGGACCCCAAGGCCAGCA
GCTGGGGAGGCTGGTTTTGGACAACCTTGGTTACCCCAGCTGCCGCCACCTCCGGAACTGGGCT
CGTTACAGCTAGAAGCGTGGTCCCTCGGGAGCACCCTGGGGGAATTCCTGCCTAGCGACGGCAG
CAGCTCACAGCTGCACCATCGGCCCATCGTCAGCTTCTGCAGGGATCCTTACCTGTGCGTCCCT
TCCCCAGAGTCTCTGCCGGATGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013374491	(Get FASTA)	NCBI Sequence Viewer
	XP_013374492	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000012342
	ENSCLAP00000012342.1

RefSeq Acc Id:	XP_013374492 ⟸ XM_013519038
- Peptide Label:	isoform X2
- Sequence:	show sequence MLEVHIPSVGPEAEEPRQSPEKGHMVFRVEVRCRGRRHSVHRRYSEFHALHKRIKKLYKVPDFP SKRLPNWRTRSLEQRRQGLEAYIQGILYLNQDVPKELLEFLRLRHFPVDPKASSWGSQLHHRPI VSFCRDPYLCVPSPESLPDVVVNGVLQGLYGFSGSPAPAQPQADCNPAPLPPVP hide sequence

RefSeq Acc Id:	XP_013374491 ⟸ XM_013519037
- Peptide Label:	isoform X1
- Sequence:	show sequence MLEVHIPSVGPEAEEPRQSPEKGHMVFRVEVRCRGRRHSVHRRYSEFHALHKRIKKLYKVPDFP SKRLPNWRTRSLEQRRQGLEAYIQGILYLNQDVPKELLEFLRLRHFPVDPKASSWGTLGEFLPS DGSSSQLHHRPIVSFCRDPYLCVPSPESLPDVVVNGVLQGLYGFSGSPAPAQPQADCNPAPLPP VP hide sequence

RefSeq Acc Id:

ENSCLAP00000012342 ⟸ ENSCLAT00000012485

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008526	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000012485	ENTREZGENE
	ENSCLAT00000012485.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
InterPro	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Snx22	ENTREZGENE
PANTHER	SORTING NEXIN-22	UniProtKB/TrEMBL
	SORTING NEXIN-22 AND 24	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
Superfamily-SCOP	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C2VFZ6_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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