Tox2 (TOX high mobility group box family member 2)

Gene: Tox2 (TOX high mobility group box family member 2) Chinchilla lanigera

Analyze

Symbol:

Tox2

Name:

TOX high mobility group box family member 2

RGD ID:

8949032

Description:

ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN female gonad development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to gonadotropin (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); genetic disease (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	13,208,413 - 13,314,827 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	13,210,606 - 13,343,344 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

focal epilepsy (ISO)

genetic disease (ISO)

T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

female gonad development (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

response to gonadotropin (ISO)

Cellular Component

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (ISO)

transcription coactivator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tox2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	13,208,413 - 13,314,827 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	13,210,606 - 13,343,344 (-)	NCBI	ChiLan1.0	ChiLan1.0

TOX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	43,914,852 - 44,069,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	43,914,852 - 44,069,616 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	42,543,492 - 42,698,256 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	41,976,906 - 42,131,670 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	41,978,220 - 42,131,666	NCBI
Celera	20	39,250,919 - 39,406,866 (+)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	39,278,939 - 39,434,941 (+)	NCBI		HuRef
CHM1_1	20	42,447,111 - 42,601,501 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	45,648,018 - 45,804,192 (+)	NCBI		T2T-CHM13v2.0

Tox2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	163,045,047 - 163,166,092 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	163,045,045 - 163,166,090 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	163,203,058 - 163,324,172 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	163,203,125 - 163,324,170 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	163,051,190 - 163,148,838 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	162,895,900 - 163,014,543 (+)	NCBI		MGSCv36	mm8
Celera	2	169,172,013 - 169,272,833 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	84.14	NCBI

Tox2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	172,272,718 - 172,400,235 (+)	NCBI		GRCr8
mRatBN7.2	3	151,853,294 - 151,980,086 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	151,853,294 - 151,980,749 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	155,660,818 - 155,787,503 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	164,159,772 - 164,286,456 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	161,903,840 - 162,030,363 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	159,569,329 - 159,694,756 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	159,569,363 - 159,694,756 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	165,761,081 - 165,890,364 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	154,075,542 - 154,205,141 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	153,981,577 - 154,111,177 (+)	NCBI
Celera	3	150,510,051 - 150,636,666 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

TOX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	49,645,134 - 49,802,367 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	49,638,242 - 49,795,474 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	40,242,893 - 40,400,054 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	41,336,616 - 41,493,142 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	41,336,612 - 41,493,142 (+)	Ensembl	panpan1.1		panPan2

TOX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	31,523,323 - 31,656,361 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	31,522,798 - 31,656,373 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	31,165,908 - 31,298,502 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	32,230,525 - 32,363,312 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	32,230,481 - 32,363,312 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	31,494,246 - 31,626,728 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	31,606,016 - 31,738,798 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	32,148,382 - 32,281,033 (+)	NCBI		UU_Cfam_GSD_1.0

Tox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	180,531,824 - 180,659,438 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936530	2,646,774 - 2,727,618 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936530	2,646,783 - 2,774,162 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TOX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	46,433,025 - 46,577,072 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	46,433,005 - 46,577,076 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	51,986,557 - 52,002,533 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TOX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	19,747,852 - 19,902,892 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	19,747,857 - 19,902,828 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	68,423,983 - 68,579,003 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tox2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	10,339,858 - 10,467,837 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	10,339,928 - 10,467,855 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005392491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005392492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01039770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01039771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01115968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000007404 ⟹ ENSCLAP00000007290

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	13,208,413 - 13,314,827 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000007405 ⟹ ENSCLAP00000007291

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	13,210,921 - 13,314,418 (-)	Ensembl

RefSeq Acc Id:

XM_005392491 ⟹ XP_005392548

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	13,210,606 - 13,314,278 (-)	NCBI

Sequence:

show sequence

CATTCTCTCGCTGCCTGGGCTTCTGTGGAATGAGAGTCGGGCTCCTTCTACTTGCAAGACGCTG
GTGCATTGCAGTTTGATGGTGACAGTGCCTACGTGGGGATGAGTGATGGAAACCCAGAGCTCCT
GTCAACTGGCCAGACCTATAACAGCCAGAGCGAGAGCAACGAAGACTATGAGATCCCCCCGATA
ACACCTCCCAACCTCCCAGAGCCACCCCTCTTGCACCTGGGGGACCACGAAGCCAGCTACCACT
CACTGTGCCACGGCCTTGCACCCAACGGTCTGCTCCCTGCCTACCCCTACCAAGCCATGGATCT
CCCGGCCATCATGGTGTCCAACATGCTGGCCCAGGATGGCCACCTGCTGTCGAGCCAACTGCCC
ACGATCCAGGAGATGGTTCACTCCGAGGTTGCTGCCTACGACTCGGGCCGGCCAGGGCCCCTAC
TGGGACGCCCAGCGATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCCCA
GATGGGCATCCGGAGCGGCATTGCCCACGGCTCCCCGTCACCCCCAGGGAGCAAATCGGCCACC
CCCTCGCCCTCCAGTTCAACTCAGGAGGAGGAATCCGAAGCCCATTTCAAGATCTCGGGAGAGA
AGAGACCCTCGGCCGACCCAGGGAAAAAGGCCAAGAACCCTAAGAAGAAGAAGAAGAAGGACCC
CAATGAGCCACAGAAGCCTGTGTCAGCCTACGCACTCTTCTTCAGAGACACTCAGGCCGCCATC
AAGGGGCAGAACCCCAGTGCCACCTTTGGGGATGTTTCCAAAATCGTGGCCTCCATGTGGGATA
GCCTGGGAGAGGAGCAGAAGCAGGCATACAAGAGGAAGACAGAAGCGGCGAAGAAGGAGTATCT
GAAAGCTCTGGCAGCCTACAGGGCTAGCCTCGTCTCCAAGAGCCCTGCAGACCAAGGCGAGACC
AAGAGCGCTCAGGCGAATCCGCCAGCCAAAATGCTCCCGCCCAAGCAGCCCATGTACGCCGTGC
CCGGCCTGGCCTCCTTCCTGACGCCCTCTGACCTGCAGGCCTTCCGCAGCGGGGCCTCCCCCGC
CAGCCTCGCCCGGACGCTGGGCTCCAAGTCACTGCTGCCAGGCCTCAGCGCATCCCCGCCGCCG
CCGCCCTCCTTCCCGCTCAGCCCCCCACTGCACCAGCAGCTGACACTGCCCCCGCATGCACAGG
GCGCCCTCCTCAGCCCACCCGTCAGCATGTCCCCGGCCCCCCAGCCTGCTGTCCTGCCCGCCCC
CATGGCGCTCCAGGTGCAGCTGGCGATGAGCCCCTCTCCTCCAGGCCCACAGGACTTCTCCCAC
CTCTCTGAGTTTCCCAGCGGCTCCGGCTCCCGCTCCCCTGGCCCATCCAACCCCACAGGCAGCG
GGGACTGGGACAGCAGCTACCCCAGTGGGGAGTGTGGCATCAGCACTTGCAGCCTGCTCCCCAG
GGACAAATCGCTCTACCTCACCTAATCCACCTCCCCTCTCCTCCCTGAGCCTCACTGGACGGGA
GTCGCTCAGAGCCTGAAGGGCTGACCGCAGGAGAGAGGCCGTGACAGGAGGCAGGGTGACCGGC
CAGTGAGACAGTGAAACATCAGCAGCCCAGGGCTGAGTCTCGCCCTCGACCTCCCACCAGACTC
CGCAGAGGCAGCCCAGCGCCCGCTGCCAGCCCAAAGAACCTGCAGGAATCCTCTGCCCGCTCGC
CTGCTTGCTCCAGGGTAGCCGCGGACCCTGCTCCTTGCCCGCACAAAACTCCCTCTGTCTGGAC
GTCGTCGTCGTCGTCGTCGT

hide sequence

RefSeq Acc Id:

XM_005392492 ⟹ XP_005392549

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	13,210,606 - 13,343,344 (-)	NCBI

Sequence:

show sequence

CCTTTGAGGCAGTGCAGCCCACTCGCCTGATACTCTTTTACTGAAATCGCAGATCCTGCCTCAG
TTTCCCATACGCAAAATGACCGATTGAGCTTATTCTCCCCCACCCCCACCCGGGGCCTTCTCGC
GGTAACTCAGTGCAGCCTGGACAAGCAGAGAGGGCGTCCTAAGAGCAGCTGAGCCGCGTCCCCC
AGTTTGATGGTGACAGTGCCTACGTGGGGATGAGTGATGGAAACCCAGAGCTCCTGTCAACTGG
CCAGACCTATAACAGCCAGAGCGAGAGCAACGAAGACTATGAGATCCCCCCGATAACACCTCCC
AACCTCCCAGAGCCACCCCTCTTGCACCTGGGGGACCACGAAGCCAGCTACCACTCACTGTGCC
ACGGCCTTGCACCCAACGGTCTGCTCCCTGCCTACCCCTACCAAGCCATGGATCTCCCGGCCAT
CATGGTGTCCAACATGCTGGCCCAGGATGGCCACCTGCTGTCGAGCCAACTGCCCACGATCCAG
GAGATGGTTCACTCCGAGGTTGCTGCCTACGACTCGGGCCGGCCAGGGCCCCTACTGGGACGCC
CAGCGATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCCCAGATGGGCAT
CCGGAGCGGCATTGCCCACGGCTCCCCGTCACCCCCAGGGAGCAAATCGGCCACCCCCTCGCCC
TCCAGTTCAACTCAGGAGGAGGAATCCGAAGCCCATTTCAAGATCTCGGGAGAGAAGAGACCCT
CGGCCGACCCAGGGAAAAAGGCCAAGAACCCTAAGAAGAAGAAGAAGAAGGACCCCAATGAGCC
ACAGAAGCCTGTGTCAGCCTACGCACTCTTCTTCAGAGACACTCAGGCCGCCATCAAGGGGCAG
AACCCCAGTGCCACCTTTGGGGATGTTTCCAAAATCGTGGCCTCCATGTGGGATAGCCTGGGAG
AGGAGCAGAAGCAGGCATACAAGAGGAAGACAGAAGCGGCGAAGAAGGAGTATCTGAAAGCTCT
GGCAGCCTACAGGGCTAGCCTCGTCTCCAAGAGCCCTGCAGACCAAGGCGAGACCAAGAGCGCT
CAGGCGAATCCGCCAGCCAAAATGCTCCCGCCCAAGCAGCCCATGTACGCCGTGCCCGGCCTGG
CCTCCTTCCTGACGCCCTCTGACCTGCAGGCCTTCCGCAGCGGGGCCTCCCCCGCCAGCCTCGC
CCGGACGCTGGGCTCCAAGTCACTGCTGCCAGGCCTCAGCGCATCCCCGCCGCCGCCGCCCTCC
TTCCCGCTCAGCCCCCCACTGCACCAGCAGCTGACACTGCCCCCGCATGCACAGGGCGCCCTCC
TCAGCCCACCCGTCAGCATGTCCCCGGCCCCCCAGCCTGCTGTCCTGCCCGCCCCCATGGCGCT
CCAGGTGCAGCTGGCGATGAGCCCCTCTCCTCCAGGCCCACAGGACTTCTCCCACCTCTCTGAG
TTTCCCAGCGGCTCCGGCTCCCGCTCCCCTGGCCCATCCAACCCCACAGGCAGCGGGGACTGGG
ACAGCAGCTACCCCAGTGGGGAGTGTGGCATCAGCACTTGCAGCCTGCTCCCCAGGGACAAATC
GCTCTACCTCACCTAATCCACCTCCCCTCTCCTCCCTGAGCCTCACTGGACGGGAGTCGCTCAG
AGCCTGAAGGGCTGACCGCAGGAGAGAGGCCGTGACAGGAGGCAGGGTGACCGGCCAGTGAGAC
AGTGAAACATCAGCAGCCCAGGGCTGAGTCTCGCCCTCGACCTCCCACCAGACTCCGCAGAGGC
AGCCCAGCGCCCGCTGCCAGCCCAAAGAACCTGCAGGAATCCTCTGCCCGCTCGCCTGCTTGCT
CCAGGGTAGCCGCGGACCCTGCTCCTTGCCCGCACAAAACTCCCTCTGTCTGGACGTCGTCGTC
GTCGTCGTCGT

hide sequence

RefSeq Acc Id:

XM_013518387 ⟹ XP_013373841

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	13,210,606 - 13,314,313 (-)	NCBI

Sequence:

show sequence

TATGCAGCAGAATCGCACAGAGGCTGTCGCGGGCGCATTCTCTCGCTGCCTGGGCTTCTGTGGA
ATGAGAGTCGGGCTCCTTCTACTTGCAAGACGCTGGTGCATTGCAGGTGTGTTTCTGCAGAAGT
TTGATGGTGACAGTGCCTACGTGGGGATGAGTGATGGAAACCCAGAGCTCCTGTCAACTGGCCA
GACCTATAACAGCCAGAGCGAGAGCAACGAAGACTATGAGATCCCCCCGATAACACCTCCCAAC
CTCCCAGAGCCACCCCTCTTGCACCTGGGGGACCACGAAGCCAGCTACCACTCACTGTGCCACG
GCCTTGCACCCAACGGTCTGCTCCCTGCCTACCCCTACCAAGCCATGGATCTCCCGGCCATCAT
GGTGTCCAACATGCTGGCCCAGGATGGCCACCTGCTGTCGAGCCAACTGCCCACGATCCAGGAG
ATGGTTCACTCCGAGGTTGCTGCCTACGACTCGGGCCGGCCAGGGCCCCTACTGGGACGCCCAG
CGATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCCCAGATGGGCATCCG
GAGCGGCATTGCCCACGGCTCCCCGTCACCCCCAGGGAGCAAATCGGCCACCCCCTCGCCCTCC
AGTTCAACTCAGGAGGAGGAATCCGAAGCCCATTTCAAGATCTCGGGAGAGAAGAGACCCTCGG
CCGACCCAGGGAAAAAGGCCAAGAACCCTAAGAAGAAGAAGAAGAAGGACCCCAATGAGCCACA
GAAGCCTGTGTCAGCCTACGCACTCTTCTTCAGAGACACTCAGGCCGCCATCAAGGGGCAGAAC
CCCAGTGCCACCTTTGGGGATGTTTCCAAAATCGTGGCCTCCATGTGGGATAGCCTGGGAGAGG
AGCAGAAGCAGGCATACAAGAGGAAGACAGAAGCGGCGAAGAAGGAGTATCTGAAAGCTCTGGC
AGCCTACAGGGCTAGCCTCGTCTCCAAGAGCCCTGCAGACCAAGGCGAGACCAAGAGCGCTCAG
GCGAATCCGCCAGCCAAAATGCTCCCGCCCAAGCAGCCCATGTACGCCGTGCCCGGCCTGGCCT
CCTTCCTGACGCCCTCTGACCTGCAGGCCTTCCGCAGCGGGGCCTCCCCCGCCAGCCTCGCCCG
GACGCTGGGCTCCAAGTCACTGCTGCCAGGCCTCAGCGCATCCCCGCCGCCGCCGCCCTCCTTC
CCGCTCAGCCCCCCACTGCACCAGCAGCTGACACTGCCCCCGCATGCACAGGGCGCCCTCCTCA
GCCCACCCGTCAGCATGTCCCCGGCCCCCCAGCCTGCTGTCCTGCCCGCCCCCATGGCGCTCCA
GGTGCAGCTGGCGATGAGCCCCTCTCCTCCAGGCCCACAGGACTTCTCCCACCTCTCTGAGTTT
CCCAGCGGCTCCGGCTCCCGCTCCCCTGGCCCATCCAACCCCACAGGCAGCGGGGACTGGGACA
GCAGCTACCCCAGTGGGGAGTGTGGCATCAGCACTTGCAGCCTGCTCCCCAGGGACAAATCGCT
CTACCTCACCTAATCCACCTCCCCTCTCCTCCCTGAGCCTCACTGGACGGGAGTCGCTCAGAGC
CTGAAGGGCTGACCGCAGGAGAGAGGCCGTGACAGGAGGCAGGGTGACCGGCCAGTGAGACAGT
GAAACATCAGCAGCCCAGGGCTGAGTCTCGCCCTCGACCTCCCACCAGACTCCGCAGAGGCAGC
CCAGCGCCCGCTGCCAGCCCAAAGAACCTGCAGGAATCCTCTGCCCGCTCGCCTGCTTGCTCCA
GGGTAGCCGCGGACCCTGCTCCTTGCCCGCACAAAACTCCCTCTGTCTGGACGTCGTCGTCGTC
GTCGTCGT

hide sequence

RefSeq Acc Id:

XM_013518388 ⟹ XP_013373842

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	13,210,606 - 13,329,990 (-)	NCBI

Sequence:

show sequence

GGGCTGCTTGGCGTTCCCAGAGACGGGGCTTAACGGTCCTGCCCCGAGCTTGGATTTTTGATGG
TGACAGTGCCTACGTGGGGATGAGTGATGGAAACCCAGAGCTCCTGTCAACTGGCCAGACCTAT
AACAGCCAGAGCGAGAGCAACGAAGACTATGAGATCCCCCCGATAACACCTCCCAACCTCCCAG
AGCCACCCCTCTTGCACCTGGGGGACCACGAAGCCAGCTACCACTCACTGTGCCACGGCCTTGC
ACCCAACGGTCTGCTCCCTGCCTACCCCTACCAAGCCATGGATCTCCCGGCCATCATGGTGTCC
AACATGCTGGCCCAGGATGGCCACCTGCTGTCGAGCCAACTGCCCACGATCCAGGAGATGGTTC
ACTCCGAGGTTGCTGCCTACGACTCGGGCCGGCCAGGGCCCCTACTGGGACGCCCAGCGATGCT
GGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCCCAGATGGGCATCCGGAGCGGC
ATTGCCCACGGCTCCCCGTCACCCCCAGGGAGCAAATCGGCCACCCCCTCGCCCTCCAGTTCAA
CTCAGGAGGAGGAATCCGAAGCCCATTTCAAGATCTCGGGAGAGAAGAGACCCTCGGCCGACCC
AGGGAAAAAGGCCAAGAACCCTAAGAAGAAGAAGAAGAAGGACCCCAATGAGCCACAGAAGCCT
GTGTCAGCCTACGCACTCTTCTTCAGAGACACTCAGGCCGCCATCAAGGGGCAGAACCCCAGTG
CCACCTTTGGGGATGTTTCCAAAATCGTGGCCTCCATGTGGGATAGCCTGGGAGAGGAGCAGAA
GCAGGCATACAAGAGGAAGACAGAAGCGGCGAAGAAGGAGTATCTGAAAGCTCTGGCAGCCTAC
AGGGCTAGCCTCGTCTCCAAGAGCCCTGCAGACCAAGGCGAGACCAAGAGCGCTCAGGCGAATC
CGCCAGCCAAAATGCTCCCGCCCAAGCAGCCCATGTACGCCGTGCCCGGCCTGGCCTCCTTCCT
GACGCCCTCTGACCTGCAGGCCTTCCGCAGCGGGGCCTCCCCCGCCAGCCTCGCCCGGACGCTG
GGCTCCAAGTCACTGCTGCCAGGCCTCAGCGCATCCCCGCCGCCGCCGCCCTCCTTCCCGCTCA
GCCCCCCACTGCACCAGCAGCTGACACTGCCCCCGCATGCACAGGGCGCCCTCCTCAGCCCACC
CGTCAGCATGTCCCCGGCCCCCCAGCCTGCTGTCCTGCCCGCCCCCATGGCGCTCCAGGTGCAG
CTGGCGATGAGCCCCTCTCCTCCAGGCCCACAGGACTTCTCCCACCTCTCTGAGTTTCCCAGCG
GCTCCGGCTCCCGCTCCCCTGGCCCATCCAACCCCACAGGCAGCGGGGACTGGGACAGCAGCTA
CCCCAGTGGGGAGTGTGGCATCAGCACTTGCAGCCTGCTCCCCAGGGACAAATCGCTCTACCTC
ACCTAATCCACCTCCCCTCTCCTCCCTGAGCCTCACTGGACGGGAGTCGCTCAGAGCCTGAAGG
GCTGACCGCAGGAGAGAGGCCGTGACAGGAGGCAGGGTGACCGGCCAGTGAGACAGTGAAACAT
CAGCAGCCCAGGGCTGAGTCTCGCCCTCGACCTCCCACCAGACTCCGCAGAGGCAGCCCAGCGC
CCGCTGCCAGCCCAAAGAACCTGCAGGAATCCTCTGCCCGCTCGCCTGCTTGCTCCAGGGTAGC
CGCGGACCCTGCTCCTTGCCCGCACAAAACTCCCTCTGTCTGGACGTCGTCGTCGTCGTCGTCG
T

hide sequence

RefSeq Acc Id:

XM_013518389 ⟹ XP_013373843

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	13,210,606 - 13,314,536 (-)	NCBI

Sequence:

show sequence

CTGGTGTGGGGACTGCCGCCAGGAGCTCCCAACATGCAGGCCCAATTTGGGATAGAAGATGGAT
TTTGATAAAAGAGTTTGATGGTGACAGTGCCTACGTGGGGATGAGTGATGGAAACCCAGAGCTC
CTGTCAACTGGCCAGACCTATAACAGCCAGAGCGAGAGCAACGAAGACTATGAGATCCCCCCGA
TAACACCTCCCAACCTCCCAGAGCCACCCCTCTTGCACCTGGGGGACCACGAAGCCAGCTACCA
CTCACTGTGCCACGGCCTTGCACCCAACGGTCTGCTCCCTGCCTACCCCTACCAAGCCATGGAT
CTCCCGGCCATCATGGTGTCCAACATGCTGGCCCAGGATGGCCACCTGCTGTCGAGCCAACTGC
CCACGATCCAGGAGATGGTTCACTCCGAGGTTGCTGCCTACGACTCGGGCCGGCCAGGGCCCCT
ACTGGGACGCCCAGCGATGCTGGCCAGCCACATGAGTGCCCTCAGCCAGTCCCAGCTCATCTCC
CAGATGGGCATCCGGAGCGGCATTGCCCACGGCTCCCCGTCACCCCCAGGGAGCAAATCGGCCA
CCCCCTCGCCCTCCAGTTCAACTCAGGAGGAGGAATCCGAAGCCCATTTCAAGATCTCGGGAGA
GAAGAGACCCTCGGCCGACCCAGGGAAAAAGGCCAAGAACCCTAAGAAGAAGAAGAAGAAGGAC
CCCAATGAGCCACAGAAGCCTGTGTCAGCCTACGCACTCTTCTTCAGAGACACTCAGGCCGCCA
TCAAGGGGCAGAACCCCAGTGCCACCTTTGGGGATGTTTCCAAAATCGTGGCCTCCATGTGGGA
TAGCCTGGGAGAGGAGCAGAAGCAGGCATACAAGAGGAAGACAGAAGCGGCGAAGAAGGAGTAT
CTGAAAGCTCTGGCAGCCTACAGGGCTAGCCTCGTCTCCAAGAGCCCTGCAGACCAAGGCGAGA
CCAAGAGCGCTCAGGCGAATCCGCCAGCCAAAATGCTCCCGCCCAAGCAGCCCATGTACGCCGT
GCCCGGCCTGGCCTCCTTCCTGACGCCCTCTGACCTGCAGGCCTTCCGCAGCGGGGCCTCCCCC
GCCAGCCTCGCCCGGACGCTGGGCTCCAAGTCACTGCTGCCAGGCCTCAGCGCATCCCCGCCGC
CGCCGCCCTCCTTCCCGCTCAGCCCCCCACTGCACCAGCAGCTGACACTGCCCCCGCATGCACA
GGGCGCCCTCCTCAGCCCACCCGTCAGCATGTCCCCGGCCCCCCAGCCTGCTGTCCTGCCCGCC
CCCATGGCGCTCCAGGTGCAGCTGGCGATGAGCCCCTCTCCTCCAGGCCCACAGGACTTCTCCC
ACCTCTCTGAGTTTCCCAGCGGCTCCGGCTCCCGCTCCCCTGGCCCATCCAACCCCACAGGCAG
CGGGGACTGGGACAGCAGCTACCCCAGTGGGGAGTGTGGCATCAGCACTTGCAGCCTGCTCCCC
AGGGACAAATCGCTCTACCTCACCTAATCCACCTCCCCTCTCCTCCCTGAGCCTCACTGGACGG
GAGTCGCTCAGAGCCTGAAGGGCTGACCGCAGGAGAGAGGCCGTGACAGGAGGCAGGGTGACCG
GCCAGTGAGACAGTGAAACATCAGCAGCCCAGGGCTGAGTCTCGCCCTCGACCTCCCACCAGAC
TCCGCAGAGGCAGCCCAGCGCCCGCTGCCAGCCCAAAGAACCTGCAGGAATCCTCTGCCCGCTC
GCCTGCTTGCTCCAGGGTAGCCGCGGACCCTGCTCCTTGCCCGCACAAAACTCCCTCTGTCTGG
ACGTCGTCGTCGTCGTCGTCGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005392548	(Get FASTA)	NCBI Sequence Viewer
	XP_005392549	(Get FASTA)	NCBI Sequence Viewer
	XP_013373841	(Get FASTA)	NCBI Sequence Viewer
	XP_013373842	(Get FASTA)	NCBI Sequence Viewer
	XP_013373843	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007290
	ENSCLAP00000007290.1
	ENSCLAP00000007291.1

RefSeq Acc Id:	XP_005392549 ⟸ XM_005392492
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V2T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGNPELLSTGQTYNSQSESNEDYEIPPITPPNLPEPPLLHLGDHEASYHSLCHGLAPNGLLP AYPYQAMDLPAIMVSNMLAQDGHLLSSQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSA LSQSQLISQMGIRSGIAHGSPSPPGSKSATPSPSSSTQEEESEAHFKISGEKRPSADPGKKAKN PKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRK TEAAKKEYLKALAAYRASLVSKSPADQGETKSAQANPPAKMLPPKQPMYAVPGLASFLTPSDLQ AFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPPLHQQLTLPPHAQGALLSPPVSMSPA PQPAVLPAPMALQVQLAMSPSPPGPQDFSHLSEFPSGSGSRSPGPSNPTGSGDWDSSYPSGECG ISTCSLLPRDKSLYLT hide sequence

RefSeq Acc Id:	XP_005392548 ⟸ XM_005392491
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V2T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGNPELLSTGQTYNSQSESNEDYEIPPITPPNLPEPPLLHLGDHEASYHSLCHGLAPNGLLP AYPYQAMDLPAIMVSNMLAQDGHLLSSQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSA LSQSQLISQMGIRSGIAHGSPSPPGSKSATPSPSSSTQEEESEAHFKISGEKRPSADPGKKAKN PKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRK TEAAKKEYLKALAAYRASLVSKSPADQGETKSAQANPPAKMLPPKQPMYAVPGLASFLTPSDLQ AFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPPLHQQLTLPPHAQGALLSPPVSMSPA PQPAVLPAPMALQVQLAMSPSPPGPQDFSHLSEFPSGSGSRSPGPSNPTGSGDWDSSYPSGECG ISTCSLLPRDKSLYLT hide sequence

RefSeq Acc Id:	XP_013373842 ⟸ XM_013518388
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V2T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGNPELLSTGQTYNSQSESNEDYEIPPITPPNLPEPPLLHLGDHEASYHSLCHGLAPNGLLP AYPYQAMDLPAIMVSNMLAQDGHLLSSQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSA LSQSQLISQMGIRSGIAHGSPSPPGSKSATPSPSSSTQEEESEAHFKISGEKRPSADPGKKAKN PKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRK TEAAKKEYLKALAAYRASLVSKSPADQGETKSAQANPPAKMLPPKQPMYAVPGLASFLTPSDLQ AFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPPLHQQLTLPPHAQGALLSPPVSMSPA PQPAVLPAPMALQVQLAMSPSPPGPQDFSHLSEFPSGSGSRSPGPSNPTGSGDWDSSYPSGECG ISTCSLLPRDKSLYLT hide sequence

RefSeq Acc Id:	XP_013373843 ⟸ XM_013518389
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V2T8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDGNPELLSTGQTYNSQSESNEDYEIPPITPPNLPEPPLLHLGDHEASYHSLCHGLAPNGLLP AYPYQAMDLPAIMVSNMLAQDGHLLSSQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSA LSQSQLISQMGIRSGIAHGSPSPPGSKSATPSPSSSTQEEESEAHFKISGEKRPSADPGKKAKN PKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRK TEAAKKEYLKALAAYRASLVSKSPADQGETKSAQANPPAKMLPPKQPMYAVPGLASFLTPSDLQ AFRSGASPASLARTLGSKSLLPGLSASPPPPPSFPLSPPLHQQLTLPPHAQGALLSPPVSMSPA PQPAVLPAPMALQVQLAMSPSPPGPQDFSHLSEFPSGSGSRSPGPSNPTGSGDWDSSYPSGECG ISTCSLLPRDKSLYLT hide sequence

RefSeq Acc Id:	XP_013373841 ⟸ XM_013518387
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UZY8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQQNRTEAVAGAFSRCLGFCGMRVGLLLLARRWCIAGVFLQKFDGDSAYVGMSDGNPELLSTGQ TYNSQSESNEDYEIPPITPPNLPEPPLLHLGDHEASYHSLCHGLAPNGLLPAYPYQAMDLPAIM VSNMLAQDGHLLSSQLPTIQEMVHSEVAAYDSGRPGPLLGRPAMLASHMSALSQSQLISQMGIR SGIAHGSPSPPGSKSATPSPSSSTQEEESEAHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQ KPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALA AYRASLVSKSPADQGETKSAQANPPAKMLPPKQPMYAVPGLASFLTPSDLQAFRSGASPASLAR TLGSKSLLPGLSASPPPPPSFPLSPPLHQQLTLPPHAQGALLSPPVSMSPAPQPAVLPAPMALQ VQLAMSPSPPGPQDFSHLSEFPSGSGSRSPGPSNPTGSGDWDSSYPSGECGISTCSLLPRDKSL YLT hide sequence

RefSeq Acc Id:

ENSCLAP00000007291 ⟸ ENSCLAT00000007405

RefSeq Acc Id:

ENSCLAP00000007290 ⟸ ENSCLAT00000007404

Protein Domains

HMG box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005127	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007404	ENTREZGENE
	ENSCLAT00000007404.1	UniProtKB/TrEMBL
	ENSCLAT00000007405.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	HMG_box_dom	UniProtKB/TrEMBL
	HMG_box_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Tox2	ENTREZGENE
PANTHER	AGAP000281-PA	UniProtKB/TrEMBL
	TOX HIGH MOBILITY GROUP BOX FAMILY MEMBER 2	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
PRINTS	HIGHMOBLTY12	UniProtKB/TrEMBL
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47095	UniProtKB/TrEMBL
UniProt	A0A8C2UZY8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V2T8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar