Pimreg (PICALM interacting mitotic regulator) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Pimreg (PICALM interacting mitotic regulator) Chinchilla lanigera
Analyze
Symbol: Pimreg
Name: PICALM interacting mitotic regulator
RGD ID: 8947979
Description: ASSOCIATED WITH cone-rod dystrophy 5 (ortholog); congenital myasthenic syndrome 2A (ortholog); developmental and epileptic encephalopathy 25 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam64a; family with sequence similarity 64 member A; family with sequence similarity 64, member A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,967,977 - 11,972,049 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,967,986 - 11,972,049 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Pimreg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546711,967,977 - 11,972,049 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546711,967,986 - 11,972,049 (+)NCBIChiLan1.0ChiLan1.0
PIMREG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,444,455 - 6,451,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,444,441 - 6,451,469 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,347,775 - 6,354,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,288,519 - 6,295,108 (+)NCBINCBI36Build 36hg18NCBI36
Celera176,368,303 - 6,374,898 (+)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef176,243,091 - 6,249,743 (+)NCBIHuRef
CHM1_1176,357,166 - 6,363,816 (+)NCBICHM1_1
T2T-CHM13v2.0176,344,181 - 6,351,199 (+)NCBIT2T-CHM13v2.0
Pimreg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,932,867 - 71,938,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1171,932,858 - 71,938,196 (+)EnsemblGRCm39 Ensembl
GRCm381172,042,428 - 72,047,372 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1172,042,032 - 72,047,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv371171,856,004 - 71,860,872 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361171,858,697 - 71,863,565 (+)NCBIMGSCv36mm8
Celera1179,567,398 - 79,572,265 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1143.81NCBI
Pimreg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81057,168,136 - 57,173,713 (+)NCBIGRCr8
mRatBN7.21056,669,603 - 56,674,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1056,669,675 - 56,674,791 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1061,333,647 - 61,338,494 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01060,822,134 - 60,826,981 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01056,321,186 - 56,326,033 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01058,613,588 - 58,618,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1058,613,674 - 58,618,514 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01058,354,609 - 58,360,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41058,895,262 - 58,900,104 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11058,908,869 - 58,913,730 (+)NCBI
Celera1055,800,601 - 55,805,442 (+)NCBICelera
Cytogenetic Map10q24NCBI
PIMREG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,045,457 - 14,052,099 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,011,515 - 16,018,156 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0176,482,837 - 6,489,480 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1176,471,520 - 6,478,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl176,471,520 - 6,478,156 (+)Ensemblpanpan1.1panPan2
PIMREG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1530,820,867 - 30,825,169 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl530,820,867 - 30,825,300 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha530,952,548 - 30,956,850 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0530,922,550 - 30,926,870 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl530,922,550 - 30,927,714 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1530,887,362 - 30,891,663 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0530,846,408 - 30,850,707 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0531,019,761 - 31,024,063 (-)NCBIUU_Cfam_GSD_1.0
Pimreg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560254,366,142 - 54,371,329 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366771,531,220 - 1,534,208 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIMREG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,898,501 - 50,903,464 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,898,493 - 50,903,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,896,983 - 52,901,847 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIMREG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1165,824,323 - 5,829,908 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605915,661,861 - 15,668,468 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pimreg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247867,568,097 - 7,573,485 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012789   ⟹   ENSCLAP00000012641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546711,967,977 - 11,972,049 (+)Ensembl
RefSeq Acc Id: XM_013522225   ⟹   XP_013377679
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546711,967,986 - 11,972,049 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377679 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012641
  ENSCLAP00000012641.1
Reference Protein Sequences
RefSeq Acc Id: XP_013377679   ⟸   XM_013522225
- UniProtKB: A0A8C2VBX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012641   ⟸   ENSCLAT00000012789


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008735 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012789 ENTREZGENE
  ENSCLAT00000012789.1 UniProtKB/TrEMBL
InterPro RCS1 UniProtKB/TrEMBL
NCBI Gene Fam64a ENTREZGENE
PANTHER PROTEIN PIMREG UniProtKB/TrEMBL
  PTHR35819 UniProtKB/TrEMBL
Pfam RCS1 UniProtKB/TrEMBL
UniProt A0A8C2VBX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 Pimreg  PICALM interacting mitotic regulator  Fam64a  family with sequence similarity 64 member A  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam64a  family with sequence similarity 64 member A    family with sequence similarity 64, member A  Symbol and/or name change 5135510 APPROVED