Xkr6 (XK related 6) - Rat Genome Database

Name: Xkr6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Xkr6 (XK related 6) Chinchilla lanigera

Analyze

Symbol:

Xkr6

Name:

XK related 6

RGD ID:

8947861

Description:

ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

XK, Kell blood group complex subunit-related family, member 6; XK-related protein 6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	XKR6 (XK related 6)	NCBI	Ortholog
Mus musculus (house mouse):	Xkr6 (X-linked Kx blood group related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC486082 (XK-related protein 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	XKR6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Xkr6 (XK related 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	52,410,317 - 52,636,228 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	52,410,318 - 52,636,952 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

plasma membrane (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Xkr6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	52,410,317 - 52,636,228 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	52,410,318 - 52,636,952 (-)	NCBI	ChiLan1.0	ChiLan1.0

XKR6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	10,896,045 - 11,201,833 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	10,896,045 - 11,201,833 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	10,753,555 - 11,059,342 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	10,791,064 - 11,096,285 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	10,791,065 - 10,897,401	NCBI
Celera	8	9,881,570 - 10,186,826 (-)	NCBI		Celera
Cytogenetic Map	8	p23.1	NCBI
HuRef	8	9,683,585 - 9,989,001 (-)	NCBI		HuRef
CHM1_1	8	10,818,743 - 11,124,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	8,537,206 - 8,882,964 (+)	NCBI		T2T-CHM13v2.0

Xkr6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	63,841,608 - 64,084,451 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	63,843,952 - 64,058,258 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	63,606,530 - 63,845,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	63,606,503 - 63,820,809 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	64,225,367 - 64,439,248 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	62,749,129 - 62,774,129 (+)	NCBI		MGSCv36	mm8
Celera	14	61,383,611 - 61,597,620 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	33.34	NCBI

Xkr6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	42,032,411 - 42,269,300 (+)	NCBI		GRCr8
mRatBN7.2	15	37,857,096 - 38,059,699 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	37,857,096 - 38,059,682 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	39,714,684 - 39,917,161 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	40,865,345 - 41,067,856 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	39,317,699 - 39,520,289 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	46,784,963 - 47,173,352 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	46,784,963 - 47,173,335 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	50,706,269 - 50,932,577 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	42,876,143 - 43,086,249 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	42,891,537 - 43,101,934 (+)	NCBI
Celera	15	37,718,631 - 37,741,631 (+)	NCBI		Celera
Cytogenetic Map	15	p12	NCBI

XKR6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	27,313,666 - 27,673,253 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	3,345,922 - 3,699,595 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	8,000,361 - 8,310,459 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

LOC486082
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	26,984,638 - 27,022,933 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	27,647,344 - 27,680,612 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	27,145,367 - 27,178,638 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	25	27,099,804 - 27,133,067 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	26,993,854 - 27,027,675 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	27,147,903 - 27,181,181 (+)	NCBI		UU_Cfam_GSD_1.0

Xkr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	5,816,640 - 5,835,750 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936675	2,751,400 - 2,983,960 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936675	2,750,401 - 2,768,457 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

XKR6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	14,086,418 - 14,381,402 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	14,087,419 - 14,381,402 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	15,526,785 - 15,555,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

XKR6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	7,908,454 - 8,203,995 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666052	34,208,730 - 34,522,122 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Xkr6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	24,714,482 - 24,931,452 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	24,713,288 - 24,931,452 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005373810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01003003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01003011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01373326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000023158 ⟹ ENSCLAP00000022942

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	52,410,317 - 52,636,228 (-)	Ensembl

RefSeq Acc Id:

XM_005373810 ⟹ XP_005373867

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	52,410,318 - 52,636,952 (-)	NCBI

Sequence:

show sequence

CATAATTTTCAGAGCCCCCACCCCCACCCCCAAAGTAAGTAAACAAGAGTGAACTGTAGAACAA
GGAAAAGACACAGCCAAAAAGGTGAGACACAGCCATCTTGATGAGGGGGGGCGTCTAACTACAC
AATGAGGTCATCCCATCTCCCGGAAGTGACACGTAATCACCTGCTTTGCACTAGCTCCGCCCCT
TCCCTCAGAGGTCCCGCCCCTCCGCCAGCAGCCGGGAGGGTGTTAGGGGGCGTTTCTCCAGGAG
GAGAGCTGTGAGCTGCGACGCTGAGGAAGGGGACCCCAAAACGTCTGGCACTGCCCGCTCCAGG
GATCACTTTGGACCGCTTCACTCGGCCCAGCGGGATTCTGAAACGCCGAAGGGTCAACCTGATG
GGTTTCGGGGTCAACGGAAGAGGGGAAGGGGAGCCCTGGCGGGGAGAACCCCCCGGCCCCCCGC
CCAGCAGCTGAGGCACAGGAGGGCGGCCATCTTGGCCGGGAGGGTAGGGCCGGGGAGCTGCGGG
CGCCGTGCGATTGGGGGGCTCGCCCGGAAGTGACGCCGACTACCCGGAAGCGGAGGGGGTTCCC
TGGCCCACTCCCCCCCGCGTTCGTTCGCTCCCCCGCTTCCTCCCCGCCCCCCTTCCTCTCCATT
CGTTTCCCCCCCTCCCCGGTCCCTGCCTTCTCTCCCCCACCCGTCCCTCCCCCCCCAACCTCCG
GAGCTGGGAAGAGAGTCAAGATGGCGGCGAAATCCGATGGCGGCGGCGTGGGGGTGGGCTTCGC
CCAGCTGCACAACCTGGACGAGGCGGTGGGCAGCGGCGGCGAGGAGGACGGGGAGCCCGGGGGC
GGCGGCTGCGCCGGCGGCGCCCCGACGCCCCCGGCCGCGCGGCCGCAGCCCTCGCCGCCGCAGC
CGGAGCGGCCGTGGCTCGACTGCCTGTGGATCGTGCTGGCGCTGCTGGTCTTCTTCGGGGACGT
GGGCACCGACCTGTGGCTGGCCCTCGACTACTACCGCAAGGGGGACTACGGCTACTTCGGGCTG
ACCCTCTCCTTCGTGCTGGTGCCGTCGCTGCTGGTGCAGAGCCTGAGCTTCCGCTGGTTCGTGC
AGGACTACACGGGCGGCGGGCTGGGCGCCGTGGAGGGGCTCAGCAGCCGGGGCCCCCCCATGAT
GGGGGCCGGCTACGGCCGCGGCGGCCCTGGCGCGGGGGTCTCGGCCACGCCGGGGGCTCAGCGC
CTGTGCCGCCTCTCCGTGTGGATCTGGCAGACGGTCATCCACCTGCTGCAGATGGGGCAGGTGT
GGAGGTATATCCGCACCATGTACCTGGGGATTCAGAGCCAGCGGCGGAAGGAACACCAGCGACG
CTTCTACTGGGCTATGATGTACGAATATGCAGACGTCAACATGCTGCGCCTCCTGGAGACCTTC
TTGGAGAGCGCCCCCCAACTGGTGCTACAGCTCTGCATAATGATCCAGAAGAACAGCGCCGAGA
CGCTGCCCTGTGTCTCCTCTGTGACTTCCCTGATGTCCCTGGCTTGGGTGCTAGCCTCCTATCA
CAAGCTGCTGCGGGACTCCAGGGACGACAAGAAGAGCATGAGCTACAGAGGGGCCCTCATCCAG
CTCTTCTGGCGCCTCTTCACCATCTCATCCCGAGTTATCTCTTTTGCCCTCTTTGCTTCCATCT
TCCAGCTCTACTTCGGGATCTTCGTGGTGGTGCACTGGTGCGCCATGGCCTTCTGGGTCATCCA
TGGCGGGACAGACTTCTGCATGTCCAAGTGGGAGGAGATCCTCTTCAACATGGTGGTAGGGATT
GTGTACATTTTCTGCTGGTTTAACGTCAAGGAAGGGCGGACTCGATATCGAATGTTTGCATATT
ATACGATAGTCCTGACCGAGAATGCTGCCTTGACGTTCCTTTGGTATTTTTACAGAGACCCGGA
GACCACTGACTCCTATGCGGTGCCAGCACTGTGTTGTGTCTTTGTGAGCTTTGTGGCTGGGATC
GCACTGATGCTCTTATACTATGGCGTGCTGCATCCCATGGGGCCTCGGGTTAAGGTCCTTGCCA
GCTCCTGTTGTGCCGAGCTGCTCTGGGGCATCCCTTTGCCTCCCGATGTTGAGCCCATGGCACC
ACAAGCCCCTGGGTACCGGGCGGCCCAGGTTACGCCCACCAGAGCCGTGACGGAACAACAGGAG
GATCTCACGGCTGACACTTGCTTGCCCGTTTTCCAAGTGAGACCCATGGAGCCCACTACCCCGT
CGGGGCGTCCTTACCCCCCAGAAGGGCCCCTCATTAAGATTGACATGCCAAGAAAGAGGTACCC
AGCTTGGGATGCTCATTTTGTGGACAGGAGGCTGAGAAGGACTATTAACATCTTGCAGTATGTC
ACCCCCACGGCAGTAGGCATTCGCTATCGAGATGGGCCGCTCCTGTACGAGTTGTTGCAGTACG
AGTCTTCACTCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005373867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022942.1

RefSeq Acc Id:

XP_005373867 ⟸ XM_005373810

- UniProtKB:

A0A8C2W1Q6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAKSDGGGVGVGFAQLHNLDEAVGSGGEEDGEPGGGGCAGGAPTPPAARPQPSPPQPERPWLD
CLWIVLALLVFFGDVGTDLWLALDYYRKGDYGYFGLTLSFVLVPSLLVQSLSFRWFVQDYTGGG
LGAVEGLSSRGPPMMGAGYGRGGPGAGVSATPGAQRLCRLSVWIWQTVIHLLQMGQVWRYIRTM
YLGIQSQRRKEHQRRFYWAMMYEYADVNMLRLLETFLESAPQLVLQLCIMIQKNSAETLPCVSS
VTSLMSLAWVLASYHKLLRDSRDDKKSMSYRGALIQLFWRLFTISSRVISFALFASIFQLYFGI
FVVVHWCAMAFWVIHGGTDFCMSKWEEILFNMVVGIVYIFCWFNVKEGRTRYRMFAYYTIVLTE
NAALTFLWYFYRDPETTDSYAVPALCCVFVSFVAGIALMLLYYGVLHPMGPRVKVLASSCCAEL
LWGIPLPPDVEPMAPQAPGYRAAQVTPTRAVTEQQEDLTADTCLPVFQVRPMEPTTPSGRPYPP
EGPLIKIDMPRKRYPAWDAHFVDRRLRRTINILQYVTPTAVGIRYRDGPLLYELLQYESSL

hide sequence

RefSeq Acc Id:

ENSCLAP00000022942 ⟸ ENSCLAT00000023158

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015743	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023158.1	UniProtKB/TrEMBL
InterPro	XK-rel	UniProtKB/TrEMBL
NCBI Gene	Xkr6	ENTREZGENE
PANTHER	XK-RELATED PROTEIN	UniProtKB/TrEMBL
	XK-RELATED PROTEIN 6	UniProtKB/TrEMBL
Pfam	XK-related	UniProtKB/TrEMBL
UniProt	A0A8C2W1Q6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Xkr6	XK related 6		XK, Kell blood group complex subunit-related family, member 6	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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