Phactr1 (phosphatase and actin regulator 1) - Rat Genome Database

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Gene: Phactr1 (phosphatase and actin regulator 1) Chinchilla lanigera
Analyze
Symbol: Phactr1
Name: phosphatase and actin regulator 1
RGD ID: 8947055
Description: ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); cell motility (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); ARTERIAL DISSECTION (ortholog); atherosclerosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,395,088 - 1,913,847 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,395,418 - 1,915,820 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phactr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,395,088 - 1,913,847 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,395,418 - 1,915,820 (-)NCBIChiLan1.0ChiLan1.0
PHACTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38612,716,767 - 13,287,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl612,716,312 - 13,290,446 (+)EnsemblGRCh38hg38GRCh38
GRCh37612,716,999 - 13,288,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36612,825,819 - 13,395,507 (+)NCBINCBI36Build 36hg18NCBI36
Celera613,945,879 - 14,520,501 (+)NCBICelera
Cytogenetic Map6p24.1NCBI
HuRef612,649,580 - 13,225,071 (+)NCBIHuRef
CHM1_1612,719,328 - 13,290,404 (+)NCBICHM1_1
T2T-CHM13v2.0612,585,196 - 13,161,093 (+)NCBIT2T-CHM13v2.0
Phactr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,833,909 - 43,292,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,834,099 - 43,292,002 (+)EnsemblGRCm39 Ensembl
GRCm381342,680,374 - 43,138,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,680,623 - 43,138,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv371342,775,992 - 43,233,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361342,691,595 - 43,149,498 (+)NCBIMGSCv36mm8
Celera1343,759,051 - 44,223,388 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.05NCBI
Phactr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,769,006 - 22,246,227 (-)NCBIGRCr8
mRatBN7.21721,560,364 - 22,040,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1721,452,066 - 21,925,681 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01723,055,730 - 23,529,379 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,379,161 - 21,852,788 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01723,245,423 - 23,761,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01725,209,368 - 25,713,282 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,393,237 - 27,884,127 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11727,395,233 - 27,885,918 (-)NCBI
Celera1721,259,994 - 21,732,655 (-)NCBICelera
Cytogenetic Map17p14-p12NCBI
PHACTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2527,369,901 - 27,944,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1623,359,830 - 23,934,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0612,560,862 - 13,136,126 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,920,920 - 13,508,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,922,871 - 13,505,609 (+)Ensemblpanpan1.1panPan2
PHACTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13512,233,152 - 12,745,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3512,491,067 - 12,741,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3512,140,823 - 12,694,920 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03512,289,444 - 12,843,408 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3512,291,040 - 12,844,113 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,116,414 - 12,670,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03512,167,394 - 12,723,499 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03513,491,510 - 14,046,540 (+)NCBIUU_Cfam_GSD_1.0
Phactr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,773,444 - 12,269,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653442,433 - 536,171 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493653442,354 - 323,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHACTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,105,874 - 9,666,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,105,422 - 9,666,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.279,692,832 - 9,955,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHACTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,859,456 - 59,440,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,862,828 - 59,133,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604412,759,821 - 13,333,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phactr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,934,212 - 13,447,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,935,048 - 13,449,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004048   ⟹   ENSCLAP00000003968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554651,395,088 - 1,651,225 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000004049   ⟹   ENSCLAP00000003969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554651,398,766 - 1,913,847 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000004050   ⟹   ENSCLAP00000003970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554651,398,766 - 1,913,847 (-)Ensembl
RefSeq Acc Id: XM_005398816   ⟹   XP_005398873
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554651,395,418 - 1,915,820 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005398873 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003968.1
  ENSCLAP00000003969
  ENSCLAP00000003969.1
  ENSCLAP00000003970.1
Reference Protein Sequences
RefSeq Acc Id: XP_005398873   ⟸   XM_005398816
- UniProtKB: A0A8C2UR64 (UniProtKB/TrEMBL),   A0A8C2YJU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003970   ⟸   ENSCLAT00000004050
RefSeq Acc Id: ENSCLAP00000003968   ⟸   ENSCLAT00000004048
RefSeq Acc Id: ENSCLAP00000003969   ⟸   ENSCLAT00000004049


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002830 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004048.1 UniProtKB/TrEMBL
  ENSCLAT00000004049 ENTREZGENE
  ENSCLAT00000004049.1 UniProtKB/TrEMBL
  ENSCLAT00000004050.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1750 UniProtKB/TrEMBL
  6.10.140.2130 UniProtKB/TrEMBL
InterPro RPEL_repeat UniProtKB/TrEMBL
NCBI Gene Phactr1 ENTREZGENE
PANTHER PHOSPHATASE AND ACTIN REGULATOR PHACTR UniProtKB/TrEMBL
  PTHR12751:SF6 UniProtKB/TrEMBL
Pfam RPEL UniProtKB/TrEMBL
PROSITE RPEL UniProtKB/TrEMBL
SMART RPEL UniProtKB/TrEMBL
UniProt A0A8C2UPK9_CHILA UniProtKB/TrEMBL
  A0A8C2UR64 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YJU5 ENTREZGENE, UniProtKB/TrEMBL