Adamts2 (ADAM metallopeptidase with thrombospondin type 1 motif 2) - Rat Genome Database

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Gene: Adamts2 (ADAM metallopeptidase with thrombospondin type 1 motif 2) Chinchilla lanigera
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Symbol: Adamts2
Name: ADAM metallopeptidase with thrombospondin type 1 motif 2
RGD ID: 8946333
Description: ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN collagen fibril organization (ortholog); lung development (ortholog); protein processing (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Ehlers-Danlos syndrome (ortholog); Ehlers-Danlos syndrome dermatosparaxis type (ortholog); FOUND IN extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: A disintegrin and metalloproteinase with thrombospondin motifs 2; ADAM metallopeptidase with thrombospondin type 1 motif, 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554081,157,740 - 1,367,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554081,157,826 - 1,367,146 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Adamts2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554081,157,740 - 1,367,146 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554081,157,826 - 1,367,146 (+)NCBIChiLan1.0ChiLan1.0
ADAMTS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385179,110,853 - 179,345,461 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5179,110,853 - 179,345,461 (-)EnsemblGRCh38hg38GRCh38
GRCh375178,537,854 - 178,772,462 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365178,473,456 - 178,704,935 (-)NCBINCBI36Build 36hg18NCBI36
Build 345178,510,735 - 178,704,935NCBI
Celera5174,165,082 - 174,399,060 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5173,265,383 - 173,499,085 (-)NCBIHuRef
CHM1_15177,971,059 - 178,205,092 (-)NCBICHM1_1
T2T-CHM13v2.05179,664,045 - 179,898,855 (-)NCBIT2T-CHM13v2.0
Adamts2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,492,912 - 50,698,400 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,492,911 - 50,698,400 (+)EnsemblGRCm39 Ensembl
GRCm381150,602,085 - 50,807,573 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,602,084 - 50,807,573 (+)EnsemblGRCm38mm10GRCm38
MGSCv371150,415,587 - 50,617,551 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361150,445,508 - 50,647,472 (+)NCBIMGSCv36mm8
Celera1155,162,823 - 55,366,156 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1130.78NCBI
Adamts2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81035,422,030 - 35,627,483 (+)NCBIGRCr8
mRatBN7.21034,920,992 - 35,126,465 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1034,921,049 - 35,123,821 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1039,593,339 - 39,808,932 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,132,574 - 8,348,184 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01034,587,008 - 34,802,598 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01036,098,051 - 36,304,416 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1036,098,051 - 36,304,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01035,868,666 - 36,075,088 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41036,168,655 - 36,377,640 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1034,268,635 - 34,483,095 (+)NCBICelera
Cytogenetic Map10q22NCBI
ADAMTS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24174,047,680 - 174,289,228 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15172,182,352 - 172,428,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05174,264,811 - 174,502,817 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15181,554,934 - 181,785,167 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5181,557,928 - 181,786,175 (-)Ensemblpanpan1.1panPan2
ADAMTS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1112,279,983 - 2,504,630 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,280,108 - 2,502,635 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha112,405,139 - 2,628,591 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0112,257,166 - 2,480,747 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl112,256,096 - 2,478,201 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1112,228,645 - 2,452,092 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0112,306,958 - 2,530,502 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0112,547,778 - 2,771,332 (+)NCBIUU_Cfam_GSD_1.0
Adamts2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213120,182,091 - 120,431,360 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367391,394,119 - 1,641,130 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367391,394,119 - 1,643,422 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADAMTS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl279,182,943 - 79,406,875 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1279,182,901 - 79,406,879 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2280,866,167 - 81,010,545 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADAMTS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12380,852,588 - 81,081,593 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2380,852,331 - 81,080,218 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607512,207,935 - 12,439,252 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adamts2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473342,070,087 - 42,264,849 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473342,070,069 - 42,264,882 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000017976   ⟹   ENSCLAP00000017800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554081,157,740 - 1,367,146 (+)Ensembl
RefSeq Acc Id: XM_013507291   ⟹   XP_013362745
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554081,157,826 - 1,367,146 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362745 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017800
  ENSCLAP00000017800.1
RefSeq Acc Id: XP_013362745   ⟸   XM_013507291
- UniProtKB: A0A8C2YRF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017800   ⟸   ENSCLAT00000017976
Protein Domains
Peptidase M12B   PLAC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012213 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017976 ENTREZGENE
  ENSCLAT00000017976.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
  2.60.120.830 UniProtKB/TrEMBL
  3.40.1620.60 UniProtKB/TrEMBL
  3.40.390.10 UniProtKB/TrEMBL
InterPro ADAMTS/ADAMTS-like UniProtKB/TrEMBL
  ADAMTS_CR_2 UniProtKB/TrEMBL
  ADAMTS_CR_3 UniProtKB/TrEMBL
  ADAMTS_spacer1 UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Pept_M12B_ADAM-TS2 UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
NCBI Gene Adamts2 ENTREZGENE
PANTHER A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN MOTIFS 2 UniProtKB/TrEMBL
  ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE UniProtKB/TrEMBL
Pfam ADAM_CR_2 UniProtKB/TrEMBL
  ADAM_CR_3 UniProtKB/TrEMBL
  ADAM_spacer1 UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
  TSP1_ADAMTS UniProtKB/TrEMBL
  TSP_1 UniProtKB/TrEMBL
PRINTS ADAMTS2 UniProtKB/TrEMBL
  ADAMTSFAMILY UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF82895 UniProtKB/TrEMBL
UniProt A0A8C2YRF6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Adamts2  ADAM metallopeptidase with thrombospondin type 1 motif 2    ADAM metallopeptidase with thrombospondin type 1 motif, 2  Symbol and/or name change 5135510 APPROVED