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Gene: Prap1 (proline rich acidic protein 1) Chinchilla lanigera

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Symbol:

Prap1

Name:

proline rich acidic protein 1

RGD ID:

8945020

Description:

ENCODES a protein that exhibits triglyceride binding (ortholog); INVOLVED IN cellular response to X-ray (ortholog); deactivation of mitotic spindle assembly checkpoint (ortholog); DNA damage response (ortholog); ASSOCIATED WITH distal 10q deletion syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich acidic protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	10,999,168 - 11,002,651 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	10,982,530 - 11,002,747 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

distal 10q deletion syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to X-ray (ISO)

deactivation of mitotic spindle assembly checkpoint (ISO)

DNA damage response (ISO)

DNA damage response, signal transduction by p53 class mediator (ISO)

negative regulation of apoptotic process (ISO)

positive regulation of intestinal lipid absorption (ISO)

positive regulation of phospholipid transport (ISO)

positive regulation of triglyceride transport (ISO)

Cellular Component

endoplasmic reticulum (ISO)

extracellular region (ISO)

Molecular Function

protein binding (ISO)

triglyceride binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Prap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955477	10,999,168 - 11,002,651 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955477	10,982,530 - 11,002,747 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	133,347,373 - 133,352,683 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	133,347,368 - 133,352,683 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	135,160,877 - 135,166,187 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	135,010,901 - 135,016,177 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	135,049,791 - 135,055,068	NCBI
Celera	10	128,351,341 - 128,356,680 (-)	NCBI		Celera
Cytogenetic Map	10	q26.3	NCBI
HuRef	10	128,704,994 - 128,710,302 (+)	NCBI		HuRef
CHM1_1	10	135,442,819 - 135,448,127 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	134,302,524 - 134,307,799 (+)	NCBI		T2T-CHM13v2.0

Prap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	139,673,309 - 139,677,116 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	139,673,308 - 139,677,113 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	140,093,396 - 140,097,203 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	140,093,395 - 140,097,200 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	147,279,295 - 147,283,102 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	139,944,718 - 139,948,517 (+)	NCBI		MGSCv36	mm8
Celera	7	139,891,394 - 139,895,266 (+)	NCBI		Celera
Cytogenetic Map	7	F4	NCBI
cM Map	7	85.1	NCBI

Prap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	204,312,723 - 204,316,519 (+)	NCBI		GRCr8
mRatBN7.2	1	194,883,078 - 194,886,874 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	194,883,078 - 194,886,872 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	203,243,943 - 203,247,739 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	210,378,980 - 210,382,776 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	203,052,811 - 203,056,607 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	212,558,257 - 212,562,053 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	212,558,257 - 212,562,051 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	219,472,906 - 219,476,702 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	199,889,629 - 199,893,425 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	200,039,620 - 200,043,415 (+)	NCBI
Celera	1	192,560,142 - 192,563,938 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI

PRAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	145,455,122 - 145,481,157 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	145,460,479 - 145,486,514 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	10	134,248,728 - 134,268,442 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	134,248,728 - 134,268,442 (+)	Ensembl	panpan1.1		panPan2

PRAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	40,927,744 - 40,931,355 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	40,982,768 - 40,986,442 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	41,562,642 - 41,566,316 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	28	41,046,731 - 41,050,405 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	41,036,325 - 41,039,999 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	41,439,226 - 41,442,900 (+)	NCBI		UU_Cfam_GSD_1.0

Prap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	6,080,911 - 6,090,531 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936486	19,477,453 - 19,480,297 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936486	19,477,278 - 19,480,387 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	141,325,965 - 141,329,955 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	153,794,810 - 153,798,712 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	53,195,600 - 53,201,846 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	41,331,491 - 41,337,643 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	13,343,674 - 13,351,284 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	13,346,621 - 13,350,428 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005402061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005402062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013503054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001230825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001230826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01055712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01055713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01083668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000004075 ⟹ ENSCLAP00000003995

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955477	10,999,168 - 11,002,651 (+)	Ensembl

RefSeq Acc Id:

XM_005402061 ⟹ XP_005402118

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955477	10,982,530 - 11,002,747 (+)	NCBI

Sequence:

show sequence

CACTGAGTGCCTAGAAGGAAAGTGGACACCCAGAACCCACGTCCTGGATGGTTCCCAACACCAT
AGAGATGGTCCTGGGTTTCCATCCAAATCTTTCAGCTCCACTTGAGATAAGAGGGGACTCCTCC
AGGGATTTGGACCAACTGTGGGTTCCCAGGCCTCAAAGCTCAGCACCTCTCACACTTAAGGAAG
GACACCAAGTAACACTGGCCCCTCCTGCTCAGAGCTGCTTCCTCTGGCCCCTGAGCGACCCAGG
CCCTATCACAGTCCTAACTCCCCGAGCTGGAGCTTGGCTCCCACTAGGACACAGGGAGGAAAGG
ATCAAAGAATAGGTGCTTCAGTGGGTGGAGTGAGGGAGGGGCATGGACCCAGCACACCCAGGTG
GCAGAAAGAACTGAGGTCACAAAGACAGAATATGGTGTCAGAGTTGGGGTAGGGTTCCCCCGTA
GCTCCCTGGAGCTGATGTAGATCCAACACCCCTCACCCTCAGCCCTACTCCATCTCATTCCAGA
AACCCAGACCTTGGTGCTGGGGGTGGGGGCTTCCAGGAGGTGCTAGCTAGCATCCCCCATCTTC
CATTCCCCACTCAAGCACAGCCTTCATTCATTTCTTCATTAGTTCATTCATGTCTATGGGTGAC
TTGTCTGGAGCCAGGAACTGAGAGTAAGCAGAAAAACAGCCCAGCCGAAGTGAACGAAGACGCA
GAGAAGAAATGAAGACCCAGGAAAAGAATGGGATGACAGGGGCACAGGAGCTGAGAACTCTGCT
AGCAACTGCGAGGACGGCTGGGCAGGCCTGGCAGCTGAAGATTAGCCAGTGCTGGAAGGGTGGC
CTTGGAATGCGATGTCTGACCAGCTTTCCTCTCTGAGGAGACTCAAGGAGGACTCGACCTGGCC
TGAGCCTGTGTTGCCCCTGCCCCTTCTCCCCCTGCTCTGACTCCCCACAAGGGTTGGCCTCTTC
TTCCAGGAAGTCTATTTCCACTTCTCTGCTGGTTCTGAGTGTCTTGGGGGCTCTACTACAGGAG
GGTGGGTCCTAATCCAATGACAGTGTTGTTGTAAAAAGAAGATTTGGATGCATGCCAAGAATGC
CTTGTGCAGCGGGATGCAGACAAGTGATGGAGCTGCAGTCCGAGGAATGCCCAGGGCCACCAGA
AGCAGGAAGGAGCAGGGAGAGACCCCTCTTTTGAGGCTTTGGAGGAGTACAGCTCTGCTGACAC
CTTGGTTTTTGATTTCTTGGTTCTAGAATTGTAAAAGAATAAATTTATTTTGTTACAATCCACC
CATTTGTGGTCATTTATGACGCAGCTCTCATAAAACCAGGTGCCCTCCAGATCTGCAGGGGACC
ACCGTTTCTCACCCTGCAGTGGCCAGGCCCCTCTGGTGTGTCCACACCTGCAGGGCTGGCAAGT
ATCATGGTGCCCCACCCAGAGACAGACAGCCTAGCCCCCCAGATGCACAGGATAAGGGTGTGCA
GAAGGAGCTAGTGGGGAGTGAGGGCTGGCTAGGAGAGTAGGGCCGGCCAGGATGCCATTCTGAG
GGAAAACAAGAGCTCTACCATGCTCCTGACCTCAGCCAGGCATTCCTGGGGAGGGGGGAGAGTC
ACTTCCTTCCATGTGTGTTTACCCAAAGTGACCCTGTCCTTCCAGAAGAGGTCAGGCAGCGTCC
CCCACACACCAAAGCTGGGAGGCTCTTCCACAGGTGGACTGGAGCCTGGGGAGGGCGCTGGTTC
TTTGCCTCCGCCTGAGGCTGATGAGCAACCTGCGGCTAATGGAATGAAAATTCATCGTGCGTCA
TCCTTGGCGCAGATCACGCGGCTCTCCGAACGGGGGGTGGGGGTGGGGGTGCAGAAGTCGCTGC
TTGGAGGCAGAAATGAAAAATAGCTATCGAAAATAAATATAAACCGCCTAGTGATCGCTCGGAG
GCGATTGAACAGGGAAAGGCGGGCGAGGGTCGCAGGACCCTGTGAGAGATAGGGCAATTGGAAG
GGGGCGTGCACCAAGGAACAGCGTCCGGAGCCTTCACACGCGCACTTCCGAGGCACACCAGCCG
TTTACAGCGGGGGCTCAGCCCTGAGACAGGCCGCCCAGGACCCCCATTCCGGCAGGAAAGGGGT
CTTTCCTCTGAACCCCACCTCGGGTCCTCTGGGAGCCAAAAGTGAACTCTAGCTAGCCTGACGT
GGCAAGCAGACCACTTTACTTCCTCAAGGGTTCCCACGGCAACAGAGCAGCCCCCCCAAAGCCA
GGTCTTAGAGGTGGAAAATAGTTGGGGGGGCGTGTAGATCCCCTGCATCTGGTTCTAGACCCTC
GTGCTGAGAAGGGGGTCTGTGTGCAATTGCTTACTCTCCTCTGTTCACACCATAATATTCCTCT
CAGTCACTGCGTCATAGGGACCTAATGGGAAGGCAGGCTGGGCTCATTCACACAGCTCTGTAAA
ATTGGGAACGGGGTGTCCCGACCCTTCCCACTGACACCGGCCCGACCCCCGTCCACCCTGTTCT
GTAATCTTGTCTCCTGTGCGTCGTCTGCCCAGTACCCCAACTCGCCATGCATTTCTATTGCAGC
GTAATTGCATCTCTCCTCTCCAAGATTTGGTGACTGCGTGTGCATAGTATGCTAACAGACGGAC
GGATGGGGGTGGGGACCCTTGGTTGAAAGTCCACGGAAGCTGGGCTAGAGGTCATGTCACAGCC
TTGCTTTCGCACGCATCACCCACCACCTTGAGATGCTGCGTCACAAGGGGAGGCGCGCACCGCA
GGGCGCGGGCTTGTGCAGGCCGGGCACGAGCACGAGCACGAGCACGAGCACGAGCGCAAGTGCG
TCGCAGCGCGCTACTGCAACAGCCGAGGGCCTGTCCCTGCCCCCGCACTTCCCCTCCCGCCTGC
TGCAAACACCTAGCGCTCTCACCCCTTGCCCTACAGCTGGTTGTCTCTGGGTGCAAGGCCCCAG
GAGTTGCGTGGTCTAAGCAAACTGGGAGCAGGCACAGGTGCCGGCGGCTTCCCACGTACCAGCC
ACCTGTGGCCGCGCATCCAGCACTTCCGCAGGTGGTTCTGGAAGAATACCACTTCCTACTTTCT
ATCTACCTCCTGCCTGCCACACAGCCACCCCCATCATGCCTCCACCCCCATGCAGGTAGCAGAT
CCTCGGTGCTCCGGTCTAAGGCCAGTTCTGTTGCTCCCCCTTCTTCTGACTCCTCTTCCCTCTT
CTCCGCACTCAGATACAGCTGACCAAGAGTTGGACCCGGTGCTCCCTGCCCACCTTGGGGACAC
ACAACTCCCACTGGCTCTCTCAGACCTGCAGGGGTGGAGCCAGTTCACAGGGAGAGGGTTGAAG
TCACTGTGGGCCAGGCTCTTCCTGGTTACCTGTCTGGTGGCTGTGCTGTTGCAGCAGGCTGGTG
CAATCCCAGCACCCCAGGTACCTGACAAGACCAAAGGCAAGCACTCAGTCCCTGAGCAGGACAC
AGAGAAGACCTGGAGCAACCACGCCTTGCAGCCTCTGGACAAGGATGACCAGCTGGTGGATCTT
CTCCAAGTGCCAAAGCCAAAGCTTGCAGCCATTGAGAAGCCAGGCAACAAAGCTTGGGTGGAGA
CTGAAGACATCCTGAGCCGTTTTCGGAGACCCCAGCAGGGTCCTGAGCCTGACCTTGACAGTCT
ATACCATCCTGCAGACGAGGAAATCCAGGTCAAAGAAGAGCCCTTTTCATGGGCAATGCTCTCT
CGCCAAGTGCTTCAGGGGCCGGAAGAGGACCTAGACCACATCTACCACCCCGTGGAGGAGTCCT
AGGGCCCTGAACACCCTCATACTCCTATCCCATGGCCCAGGCTGTCAGGACTGACAACCCTTCC
CAGCTAGAAAAATAAACATCTGCAAACAGAA

hide sequence

RefSeq Acc Id:

XM_005402062 ⟹ XP_005402119

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955477	10,982,530 - 11,002,747 (+)	NCBI

Sequence:

show sequence

CACTGAGTGCCTAGAAGGAAAGTGGACACCCAGAACCCACGTCCTGGATGGTTCCCAACACCAT
AGAGATGGTCCTGGGTTTCCATCCAAATCTTTCAGCTCCACTTGAGATAAGAGGGGACTCCTCC
AGGGATTTGGACCAACTGTGGGTTCCCAGGCCTCAAAGCTCAGCACCTCTCACACTTAAGGAAG
GACACCAAGTAACACTGGCCCCTCCTGCTCAGAGCTGCTTCCTCTGGCCCCTGAGCGACCCAGG
CCCTATCACAGTCCTAACTCCCCGAGCTGGAGCTTGGCTCCCACTAGGACACAGGGAGGAAAGG
ATCAAAGAATAGGTGCTTCAGTGGGTGGAGTGAGGGAGGGGCATGGACCCAGCACACCCAGGTG
GCAGAAAGAACTGAGGTCACAAAGACAGAATATGGTGTCAGAGTTGGGGTAGGGTTCCCCCGTA
GCTCCCTGGAGCTGATGTAGATCCAACACCCCTCACCCTCAGCCCTACTCCATCTCATTCCAGA
AACCCAGACCTTGGTGCTGGGGGTGGGGGCTTCCAGGAGGTGCTAGCTAGCATCCCCCATCTTC
CATTCCCCACTCAAGCACAGCCTTCATTCATTTCTTCATTAGTTCATTCATGTCTATGGGTGAC
TTGTCTGGAGCCAGGAACTGAGAGTAAGCAGAAAAACAGCCCAGCCGAAGTGAACGAAGACGCA
GAGAAGAAATGAAGACCCAGGTTGGCCTCTTCTTCCAGGAAGTCTATTTCCACTTCTCTGCTGG
TTCTGAGTGTCTTGGGGGCTCTACTACAGGAGGGTGGGTCCTAATCCAATGACAGTGTTGTTGT
AAAAAGAAGATTTGGATGCATGCCAAGAATGCCTTGTGCAGCGGGATGCAGACAAGTGATGGAG
CTGCAGTCCGAGGAATGCCCAGGGCCACCAGAAGCAGGAAGGAGCAGGGAGAGACCCCTCTTTT
GAGGCTTTGGAGGAGTACAGCTCTGCTGACACCTTGGTTTTTGATTTCTTGGTTCTAGAATTGT
AAAAGAATAAATTTATTTTGTTACAATCCACCCATTTGTGGTCATTTATGACGCAGCTCTCATA
AAACCAGGTGCCCTCCAGATCTGCAGGGGACCACCGTTTCTCACCCTGCAGTGGCCAGGCCCCT
CTGGTGTGTCCACACCTGCAGGGCTGGCAAGTATCATGGTGCCCCACCCAGAGACAGACAGCCT
AGCCCCCCAGATGCACAGGATAAGGGTGTGCAGAAGGAGCTAGTGGGGAGTGAGGGCTGGCTAG
GAGAGTAGGGCCGGCCAGGATGCCATTCTGAGGGAAAACAAGAGCTCTACCATGCTCCTGACCT
CAGCCAGGCATTCCTGGGGAGGGGGGAGAGTCACTTCCTTCCATGTGTGTTTACCCAAAGTGAC
CCTGTCCTTCCAGAAGAGGTCAGGCAGCGTCCCCCACACACCAAAGCTGGGAGGCTCTTCCACA
GGTGGACTGGAGCCTGGGGAGGGCGCTGGTTCTTTGCCTCCGCCTGAGGCTGATGAGCAACCTG
CGGCTAATGGAATGAAAATTCATCGTGCGTCATCCTTGGCGCAGATCACGCGGCTCTCCGAACG
GGGGGTGGGGGTGGGGGTGCAGAAGTCGCTGCTTGGAGGCAGAAATGAAAAATAGCTATCGAAA
ATAAATATAAACCGCCTAGTGATCGCTCGGAGGCGATTGAACAGGGAAAGGCGGGCGAGGGTCG
CAGGACCCTGTGAGAGATAGGGCAATTGGAAGGGGGCGTGCACCAAGGAACAGCGTCCGGAGCC
TTCACACGCGCACTTCCGAGGCACACCAGCCGTTTACAGCGGGGGCTCAGCCCTGAGACAGGCC
GCCCAGGACCCCCATTCCGGCAGGAAAGGGGTCTTTCCTCTGAACCCCACCTCGGGTCCTCTGG
GAGCCAAAAGTGAACTCTAGCTAGCCTGACGTGGCAAGCAGACCACTTTACTTCCTCAAGGGTT
CCCACGGCAACAGAGCAGCCCCCCCAAAGCCAGGTCTTAGAGGTGGAAAATAGTTGGGGGGGCG
TGTAGATCCCCTGCATCTGGTTCTAGACCCTCGTGCTGAGAAGGGGGTCTGTGTGCAATTGCTT
ACTCTCCTCTGTTCACACCATAATATTCCTCTCAGTCACTGCGTCATAGGGACCTAATGGGAAG
GCAGGCTGGGCTCATTCACACAGCTCTGTAAAATTGGGAACGGGGTGTCCCGACCCTTCCCACT
GACACCGGCCCGACCCCCGTCCACCCTGTTCTGTAATCTTGTCTCCTGTGCGTCGTCTGCCCAG
TACCCCAACTCGCCATGCATTTCTATTGCAGCGTAATTGCATCTCTCCTCTCCAAGATTTGGTG
ACTGCGTGTGCATAGTATGCTAACAGACGGACGGATGGGGGTGGGGACCCTTGGTTGAAAGTCC
ACGGAAGCTGGGCTAGAGGTCATGTCACAGCCTTGCTTTCGCACGCATCACCCACCACCTTGAG
ATGCTGCGTCACAAGGGGAGGCGCGCACCGCAGGGCGCGGGCTTGTGCAGGCCGGGCACGAGCA
CGAGCACGAGCACGAGCACGAGCGCAAGTGCGTCGCAGCGCGCTACTGCAACAGCCGAGGGCCT
GTCCCTGCCCCCGCACTTCCCCTCCCGCCTGCTGCAAACACCTAGCGCTCTCACCCCTTGCCCT
ACAGCTGGTTGTCTCTGGGTGCAAGGCCCCAGGAGTTGCGTGGTCTAAGCAAACTGGGAGCAGG
CACAGGTGCCGGCGGCTTCCCACGTACCAGCCACCTGTGGCCGCGCATCCAGCACTTCCGCAGG
TGGTTCTGGAAGAATACCACTTCCTACTTTCTATCTACCTCCTGCCTGCCACACAGCCACCCCC
ATCATGCCTCCACCCCCATGCAGGTAGCAGATCCTCGGTGCTCCGGTCTAAGGCCAGTTCTGTT
GCTCCCCCTTCTTCTGACTCCTCTTCCCTCTTCTCCGCACTCAGATACAGCTGACCAAGAGTTG
GACCCGGTGCTCCCTGCCCACCTTGGGGACACACAACTCCCACTGGCTCTCTCAGACCTGCAGG
GGTGGAGCCAGTTCACAGGGAGAGGGTTGAAGTCACTGTGGGCCAGGCTCTTCCTGGTTACCTG
TCTGGTGGCTGTGCTGTTGCAGCAGGCTGGTGCAATCCCAGCACCCCAGGTACCTGACAAGACC
AAAGGCAAGCACTCAGTCCCTGAGCAGGACACAGAGAAGACCTGGAGCAACCACGCCTTGCAGC
CTCTGGACAAGGATGACCAGCTGGTGGATCTTCTCCAAGTGCCAAAGCCAAAGCTTGCAGCCAT
TGAGAAGCCAGGCAACAAAGCTTGGGTGGAGACTGAAGACATCCTGAGCCGTTTTCGGAGACCC
CAGCAGGGTCCTGAGCCTGACCTTGACAGTCTATACCATCCTGCAGACGAGGAAATCCAGGTCA
AAGAAGAGCCCTTTTCATGGGCAATGCTCTCTCGCCAAGTGCTTCAGGGGCCGGAAGAGGACCT
AGACCACATCTACCACCCCGTGGAGGAGTCCTAGGGCCCTGAACACCCTCATACTCCTATCCCA
TGGCCCAGGCTGTCAGGACTGACAACCCTTCCCAGCTAGAAAAATAAACATCTGCAAACAGAA

hide sequence

RefSeq Acc Id:

XM_013503054 ⟹ XP_013358508

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955477	10,990,193 - 11,002,747 (+)	NCBI

Sequence:

show sequence

TAGTTTAGTGTGAAGGCCCTGGGTCTGATCTCTAGTGCCACAAAACAAAACAAAAAACCACAGT
CTTTAAAGAGTAGAGGCAGAGAACAAAACTGGAAGATATTTGAAACACAAGTGACAAAGGACTT
GCTGTGGGGTGAATGATGTCAAACGAACAAACACCAAAAACCCCTCACCAAGTCCTAACCCGTG
GTACTTGTAAAAGTGACTTTATTTGTAAATAAAGTCTCTGCAGATGTAACCAGTTTAACATGTC
ATACTGGGTTAGGGTGGGTCCTAATCCAATGACAGTGTTGTTGTAAAAAGAAGATTTGGATGCA
TGCCAAGAATGCCTTGTGCAGCGGGATGCAGACAAGTGATGGAGCTGCAGTCCGAGGAATGCCC
AGGGCCACCAGAAGCAGGAAGGAGCAGGGAGAGACCCCTCTTTTGAGGCTTTGGAGGAGTACAG
CTCTGCTGACACCTTGGTTTTTGATTTCTTGGTTCTAGAATTGTAAAAGAATAAATTTATTTTG
TTACAATCCACCCATTTGTGGTCATTTATGACGCAGCTCTCATAAAACCAGGTGCCCTCCAGAT
CTGCAGGGGACCACCGTTTCTCACCCTGCAGTGGCCAGGCCCCTCTGGTGTGTCCACACCTGCA
GGGCTGGCAAGTATCATGGTGCCCCACCCAGAGACAGACAGCCTAGCCCCCCAGATGCACAGGA
TAAGGGTGTGCAGAAGGAGCTAGTGGGGAGTGAGGGCTGGCTAGGAGAGTAGGGCCGGCCAGGA
TGCCATTCTGAGGGAAAACAAGAGCTCTACCATGCTCCTGACCTCAGCCAGGCATTCCTGGGGA
GGGGGGAGAGTCACTTCCTTCCATGTGTGTTTACCCAAAGTGACCCTGTCCTTCCAGAAGAGGT
CAGGCAGCGTCCCCCACACACCAAAGCTGGGAGGCTCTTCCACAGGTGGACTGGAGCCTGGGGA
GGGCGCTGGTTCTTTGCCTCCGCCTGAGGCTGATGAGCAACCTGCGGCTAATGGAATGAAAATT
CATCGTGCGTCATCCTTGGCGCAGATCACGCGGCTCTCCGAACGGGGGGTGGGGGTGGGGGTGC
AGAAGTCGCTGCTTGGAGGCAGAAATGAAAAATAGCTATCGAAAATAAATATAAACCGCCTAGT
GATCGCTCGGAGGCGATTGAACAGGGAAAGGCGGGCGAGGGTCGCAGGACCCTGTGAGAGATAG
GGCAATTGGAAGGGGGCGTGCACCAAGGAACAGCGTCCGGAGCCTTCACACGCGCACTTCCGAG
GCACACCAGCCGTTTACAGCGGGGGCTCAGCCCTGAGACAGGCCGCCCAGGACCCCCATTCCGG
CAGGAAAGGGGTCTTTCCTCTGAACCCCACCTCGGGTCCTCTGGGAGCCAAAAGTGAACTCTAG
CTAGCCTGACGTGGCAAGCAGACCACTTTACTTCCTCAAGGGTTCCCACGGCAACAGAGCAGCC
CCCCCAAAGCCAGGTCTTAGAGGTGGAAAATAGTTGGGGGGGCGTGTAGATCCCCTGCATCTGG
TTCTAGACCCTCGTGCTGAGAAGGGGGTCTGTGTGCAATTGCTTACTCTCCTCTGTTCACACCA
TAATATTCCTCTCAGTCACTGCGTCATAGGGACCTAATGGGAAGGCAGGCTGGGCTCATTCACA
CAGCTCTGTAAAATTGGGAACGGGGTGTCCCGACCCTTCCCACTGACACCGGCCCGACCCCCGT
CCACCCTGTTCTGTAATCTTGTCTCCTGTGCGTCGTCTGCCCAGTACCCCAACTCGCCATGCAT
TTCTATTGCAGCGTAATTGCATCTCTCCTCTCCAAGATTTGGTGACTGCGTGTGCATAGTATGC
TAACAGACGGACGGATGGGGGTGGGGACCCTTGGTTGAAAGTCCACGGAAGCTGGGCTAGAGGT
CATGTCACAGCCTTGCTTTCGCACGCATCACCCACCACCTTGAGATGCTGCGTCACAAGGGGAG
GCGCGCACCGCAGGGCGCGGGCTTGTGCAGGCCGGGCACGAGCACGAGCACGAGCACGAGCACG
AGCGCAAGTGCGTCGCAGCGCGCTACTGCAACAGCCGAGGGCCTGTCCCTGCCCCCGCACTTCC
CCTCCCGCCTGCTGCAAACACCTAGCGCTCTCACCCCTTGCCCTACAGCTGGTTGTCTCTGGGT
GCAAGGCCCCAGGAGTTGCGTGGTCTAAGCAAACTGGGAGCAGGCACAGGTGCCGGCGGCTTCC
CACGTACCAGCCACCTGTGGCCGCGCATCCAGCACTTCCGCAGGTGGTTCTGGAAGAATACCAC
TTCCTACTTTCTATCTACCTCCTGCCTGCCACACAGCCACCCCCATCATGCCTCCACCCCCATG
CAGGTAGCAGATCCTCGGTGCTCCGGTCTAAGGCCAGTTCTGTTGCTCCCCCTTCTTCTGACTC
CTCTTCCCTCTTCTCCGCACTCAGATACAGCTGACCAAGAGTTGGACCCGGTGCTCCCTGCCCA
CCTTGGGGACACACAACTCCCACTGGCTCTCTCAGACCTGCAGGGGTGGAGCCAGTTCACAGGG
AGAGGGTTGAAGTCACTGTGGGCCAGGCTCTTCCTGGTTACCTGTCTGGTGGCTGTGCTGTTGC
AGCAGGCTGGTGCAATCCCAGCACCCCAGGTACCTGACAAGACCAAAGGCAAGCACTCAGTCCC
TGAGCAGGACACAGAGAAGACCTGGAGCAACCACGCCTTGCAGCCTCTGGACAAGGATGACCAG
CTGGTGGATCTTCTCCAAGTGCCAAAGCCAAAGCTTGCAGCCATTGAGAAGCCAGGCAACAAAG
CTTGGGTGGAGACTGAAGACATCCTGAGCCGTTTTCGGAGACCCCAGCAGGGTCCTGAGCCTGA
CCTTGACAGTCTATACCATCCTGCAGACGAGGAAATCCAGGTCAAAGAAGAGCCCTTTTCATGG
GCAATGCTCTCTCGCCAAGTGCTTCAGGGGCCGGAAGAGGACCTAGACCACATCTACCACCCCG
TGGAGGAGTCCTAGGGCCCTGAACACCCTCATACTCCTATCCCATGGCCCAGGCTGTCAGGACT
GACAACCCTTCCCAGCTAGAAAAATAAACATCTGCAAACAGAA

hide sequence

RefSeq Acc Id:

XR_001230825

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955477	10,982,563 - 10,989,189 (+)	NCBI

Sequence:

show sequence

AACCCACGTCCTGGATGGTTCCCAACACCATAGAGATGGTCCTGGGTTTCCATCCAAATCTTTC
AGCTCCACTTGAGATAAGAGGGGACTCCTCCAGGGATTTGGACCAACTGTGGGTTCCCAGGCCT
CAAAGCTCAGCACCTCTCACACTTAAGGAAGGACACCAAGTAACACTGGCCCCTCCTGCTCAGA
GCTGCTTCCTCTGGCCCCTGAGCGACCCAGGCCCTATCACAGTCCTAACTCCCCGAGCTGGAGC
TTGGCTCCCACTAGGACACAGGGAGGAAAGGATCAAAGAATAGGTGCTTCAGTGGGTGGAGTGA
GGGAGGGGCATGGACCCAGCACACCCAGGTGGCAGAAAGAACTGAGGTCACAAAGACAGAATAT
GGTGTCAGAGTTGGGGTAGGGTTCCCCCGTAGCTCCCTGGAGCTGATGTAGATCCAACACCCCT
CACCCTCAGCCCTACTCCATCTCATTCCAGAAACCCAGACCTTGGTGCTGGGGGTGGGGGCTTC
CAGGAGGTGCTAGCTAGCATCCCCCATCTTCCATTCCCCACTCAAGCACAGCCTTCATTCATTT
CTTCATTAGTTCATTCATGTCTATGGGTGACTTGTCTGGAGCCAGGAACTGAGAGTAAGCAGAA
AAACAGCCCAGCCGAAGTGAACGAAGACGCAGAGAAGAAATGAAGACCCAGGAAAAGAATGGGA
TGACAGGGGCACAGGAGCTGAGAACTCTGCTAGCAACTGCGAGGACGGCTGGGCAGGCCTGGCA
GCTGAAGATTAGCCAGTGCTGGAAGGGTGGCCTTGGAATGCGATGTCTGACCAGCTTTCCTCTC
TGAGGAGACTCAAGGAGGACTCGACCTGGCCTGAGCCTGTGTTGCCCCTGCCCCTTCTCCCCCT
GCTCTGACTCCCCACAAGGGTTGGCCTCTTCTTCCAGGAAGTCTATTTCCACTTCTCTGCTGGT
TCTGAGTGTCTTGGGGGCTCTACTACAGGAGGGTGAGCTTTGACAGAAAAGGAATGCAGCAGAT
GACCTTCAAGCTGATGATGGACAAAGTAGATAAGTAAAATACACTCAATCATTAGAAAAAGAAA
GGTCCTGTGTCTGTTGAAAAATTGAGTCTGTTGTTAAAACCTTCTCACAAAGAACTCCAAGCCC
AGAGAATATCACTGCTGATCTTCCAGTCAGTTAAGAGTAAACAATACAAGCATCACATTGTAGA
GGAGATGATGAATTCTCCCAGAGAATTTTTTAATATACTCCCAGAGAAGAGAATAAGGTAACAC
TTGCTACCTCCTGGGGCCTATATAACCTTGACCTTATCATAGCCTGGCAAGGACTACAAGAAGC
AAAGATTGCAGACATCAAAACGAAGACCCCCAAATGAAATTTGAGGAAGCCAAATGGAGCAAGA
CGTAAAAACCAACACATCAGGAGTAGTTGGGTGTATTTTGGACTTGAAAATTGTTTTAACTTTT
GAAAAGCAGTCAGTATCTTCACCATGTTAAAAATATTGAAAAAAAATCATCTGATCAGTTTCAA
TGGGAATGGAAAAGTTATCTGTTAAGATTTGACCATCATTTACTATTTTAAAAACTTATTAGCA
CATTAAGGCCAGAAAGTTCTTTAACCTTATAATAGTTATCCTGAAAAACCCTACAGCAGAGCAT
ATAGAATGTAAATCTTCCTGCCTTTGAGATGAAAAAGGAGATAAACATGTCCTTGACCAGGTCA
GTTCTATAAAACAGAAAGCTGGAGGTCTCAGCCGATGCAGCTGTGCAGGGCAAAGAAATGAGAC
CTGAGGCCAGCACAAATTATGTAATACTATCATTATTCATGGATGAAGATGTTTTATGTGTAGA
AAATCCAAAAAATACTACACATAAATTATAAAGATTGAAAGTGAGAACACTGATGTCATTGGTT
ACATTTCTATATGTTAGTGGCCAAAAAAATATAGAAAATGACTTTTGAAAGATTCCAGTTAAAC
CGGGCATTGTGGTGCACACCTGTAATCCCAGCACTCAAGAAGCTGAGGCAGGAG

hide sequence

RefSeq Acc Id:

XR_001230826

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955477	10,982,553 - 11,001,519 (+)	NCBI

Sequence:

show sequence

GGACACCCAGAACCCACGTCCTGGATGGTTCCCAACACCATAGAGATGGTCCTGGGTTTCCATC
CAAATCTTTCAGCTCCACTTGAGATAAGAGGGGACTCCTCCAGGGATTTGGACCAACTGTGGGT
TCCCAGGCCTCAAAGCTCAGCACCTCTCACACTTAAGGAAGGACACCAAGTAACACTGGCCCCT
CCTGCTCAGAGCTGCTTCCTCTGGCCCCTGAGCGACCCAGGCCCTATCACAGTCCTAACTCCCC
GAGCTGGAGCTTGGCTCCCACTAGGACACAGGGAGGAAAGGATCAAAGAATAGGTGCTTCAGTG
GGTGGAGTGAGGGAGGGGCATGGACCCAGCACACCCAGGTGGCAGAAAGAACTGAGGTCACAAA
GACAGAATATGGTGTCAGAGTTGGGGTAGGGTTCCCCCGTAGCTCCCTGGAGCTGATGTAGATC
CAACACCCCTCACCCTCAGCCCTACTCCATCTCATTCCAGAAACCCAGACCTTGGTGCTGGGGG
TGGGGGCTTCCAGGAGGTGCTAGCTAGCATCCCCCATCTTCCATTCCCCACTCAAGCACAGCCT
TCATTCATTTCTTCATTAGTTCATTCATGTCTATGGGTGACTTGTCTGGAGCCAGGAACTGAGA
GTAAGCAGAAAAACAGCCCAGCCGAAGTGAACGAAGACGCAGAGAAGAAATGAAGACCCAGGCT
CTTCCTGGTTACCTGTCTGGTGGCTGTGCTGTTGCAGCAGGCTGGTGCAATCCCAGCACCCCAG
GTACCTGACAAGACCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005402118	(Get FASTA)	NCBI Sequence Viewer
	XP_005402119	(Get FASTA)	NCBI Sequence Viewer
	XP_013358508	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000003995.1

RefSeq Acc Id:

XP_005402118 ⟸ XM_005402061

- Sequence:

show sequence

MQVADPRCSGLRPVLLLPLLLTPLPSSPHSDTADQELDPVLPAHLGDTQLPLALSDLQGWSQFT
GRGLKSLWARLFLVTCLVAVLLQQAGAIPAPQVPDKTKGKHSVPEQDTEKTWSNHALQPLDKDD
QLVDLLQVPKPKLAAIEKPGNKAWVETEDILSRFRRPQQGPEPDLDSLYHPADEEIQVKEEPFS
WAMLSRQVLQGPEEDLDHIYHPVEES

hide sequence

RefSeq Acc Id:

XP_005402119 ⟸ XM_005402062

- Sequence:

show sequence

MQVADPRCSGLRPVLLLPLLLTPLPSSPHSDTADQELDPVLPAHLGDTQLPLALSDLQGWSQFT
GRGLKSLWARLFLVTCLVAVLLQQAGAIPAPQVPDKTKGKHSVPEQDTEKTWSNHALQPLDKDD
QLVDLLQVPKPKLAAIEKPGNKAWVETEDILSRFRRPQQGPEPDLDSLYHPADEEIQVKEEPFS
WAMLSRQVLQGPEEDLDHIYHPVEES

hide sequence

RefSeq Acc Id:

XP_013358508 ⟸ XM_013503054

- Sequence:

show sequence

MQVADPRCSGLRPVLLLPLLLTPLPSSPHSDTADQELDPVLPAHLGDTQLPLALSDLQGWSQFT
GRGLKSLWARLFLVTCLVAVLLQQAGAIPAPQVPDKTKGKHSVPEQDTEKTWSNHALQPLDKDD
QLVDLLQVPKPKLAAIEKPGNKAWVETEDILSRFRRPQQGPEPDLDSLYHPADEEIQVKEEPFS
WAMLSRQVLQGPEEDLDHIYHPVEES

hide sequence

Ensembl Acc Id:

ENSCLAP00000003995 ⟸ ENSCLAT00000004075

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000002853	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004075.1	UniProtKB/TrEMBL
InterPro	PRAP	UniProtKB/TrEMBL
NCBI Gene	Prap1	ENTREZGENE
PANTHER	PROLINE-RICH ACIDIC PROTEIN 1	UniProtKB/TrEMBL
	PTHR37861	UniProtKB/TrEMBL
Pfam	PRAP	UniProtKB/TrEMBL
UniProt	A0A8C2YJV6_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Prap1	proline rich acidic protein 1		proline-rich acidic protein 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar