Prom1 (prominin 1) - Rat Genome Database

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Gene: Prom1 (prominin 1) Chinchilla lanigera
Analyze
Symbol: Prom1
Name: prominin 1
RGD ID: 8944041
Description: ENCODES a protein that exhibits actinin binding (ortholog); cadherin binding (ortholog); INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); glomerular parietal epithelial cell differentiation (ortholog); glomerular visceral epithelial cell differentiation (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); cone-rod dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: prominin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,955,501 - 8,059,537 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Prom1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554807,955,501 - 8,059,537 (+)NCBIChiLan1.0ChiLan1.0
PROM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl415,963,076 - 16,084,378 (-)EnsemblGRCh38hg38GRCh38
GRCh38415,968,226 - 16,084,059 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37415,969,851 - 16,085,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,578,955 - 15,686,664 (-)NCBINCBI36hg18NCBI36
Build 34415,646,125 - 15,753,835NCBI
Celera416,434,397 - 16,550,164 (-)NCBI
Cytogenetic Map4p15.32NCBI
HuRef415,319,438 - 15,435,190 (-)NCBIHuRef
CHM1_1415,967,639 - 16,083,574 (-)NCBICHM1_1
Prom1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39544,150,963 - 44,260,850 (-)NCBIGRCm39mm39
GRCm39 Ensembl544,150,962 - 44,259,374 (-)Ensembl
GRCm38543,993,621 - 44,102,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,993,620 - 44,102,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv37544,384,861 - 44,492,975 (-)NCBIGRCm37mm9NCBIm37
MGSCv36544,281,870 - 44,389,929 (-)NCBImm8
Celera541,422,565 - 41,530,564 (-)NCBICelera
Cytogenetic Map5B3NCBI
Prom1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21466,989,545 - 67,094,534 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1466,990,160 - 67,094,527 (+)Ensembl
Rnor_6.01471,532,321 - 71,637,400 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,533,063 - 71,637,417 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,573,130 - 71,668,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,122,986 - 72,230,453 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11472,125,409 - 72,232,843 (+)NCBI
Celera1465,949,815 - 66,052,606 (+)NCBICelera
Cytogenetic Map14q21NCBI
PROM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1415,702,155 - 15,816,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,702,159 - 15,815,454 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0410,405,299 - 10,519,518 (-)NCBIMhudiblu_PPA_v0panPan3
PROM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,229,487 - 64,362,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,260,685 - 64,382,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha366,778,870 - 66,880,110 (+)NCBI
ROS_Cfam_1.0364,707,547 - 64,840,616 (+)NCBI
UMICH_Zoey_3.1364,228,808 - 64,330,214 (+)NCBI
UNSW_CanFamBas_1.0364,432,846 - 64,534,046 (+)NCBI
UU_Cfam_GSD_1.0364,793,321 - 64,894,543 (+)NCBI
Prom1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,176,590 - 58,315,536 (+)NCBI
SpeTri2.0NW_00493647711,878,261 - 12,017,228 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PROM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,215,659 - 11,317,312 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,215,659 - 11,331,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,866,626 - 10,987,214 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PROM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,093,699 - 34,243,630 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2734,129,532 - 34,243,778 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604780,860,464 - 80,977,347 (+)NCBIVero_WHO_p1.0
Prom1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475515,765,162 - 15,886,023 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001752   ⟹   ENSCLAP00000001709
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001753   ⟹   ENSCLAP00000001710
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,059,589 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001754   ⟹   ENSCLAP00000001711
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554807,961,389 - 8,045,571 (+)Ensembl
RefSeq Acc Id: XM_005402515   ⟹   XP_005402572
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554807,958,018 - 8,059,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402516   ⟹   XP_005402573
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554807,958,018 - 8,059,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005402519   ⟹   XP_005402576
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554807,958,019 - 8,045,924 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503331   ⟹   XP_013358785
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554807,955,501 - 8,045,924 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402572 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402573 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402576 (Get FASTA)   NCBI Sequence Viewer  
  XP_013358785 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005402572   ⟸   XM_005402515
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005402573   ⟸   XM_005402516
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005402576   ⟸   XM_005402519
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013358785   ⟸   XM_013503331
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000001709   ⟸   ENSCLAT00000001752
RefSeq Acc Id: ENSCLAP00000001711   ⟸   ENSCLAT00000001754
RefSeq Acc Id: ENSCLAP00000001710   ⟸   ENSCLAT00000001753


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001277 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000001710 ENTREZGENE
  ENSCLAP00000001711 ENTREZGENE
Ensembl Transcript ENSCLAT00000001753 ENTREZGENE
  ENSCLAT00000001754 ENTREZGENE
NCBI Gene Prom1 ENTREZGENE