Nabp2 (nucleic acid binding protein 2)

Gene: Nabp2 (nucleic acid binding protein 2) Chinchilla lanigera

Analyze

Symbol:

Nabp2

Name:

nucleic acid binding protein 2

RGD ID:

8943853

Description:

ENCODES a protein that exhibits C-rich strand telomeric DNA binding (ortholog); DNA polymerase binding (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytosol (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SOSS complex subunit B1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,835,205 - 3,840,634 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,835,205 - 3,836,841 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (ISO)

DNA repair (ISO)

double-strand break repair via homologous recombination (ISO)

establishment of protein localization to telomere (ISO)

mitotic G2/M transition checkpoint (ISO)

positive regulation of telomere capping (ISO)

response to ionizing radiation (ISO)

Cellular Component

chromosome, telomeric region (ISO)

cytosol (ISO)

nucleoplasm (ISO)

nucleus (ISO)

site of double-strand break (ISO)

SOSS complex (ISO)

Molecular Function

C-rich strand telomeric DNA binding (ISO)

DNA polymerase binding (ISO)

G-rich strand telomeric DNA binding (ISO)

protein binding (ISO)

single-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Nabp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,835,205 - 3,840,634 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,835,205 - 3,836,841 (+)	NCBI	ChiLan1.0	ChiLan1.0

NABP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,222,015 - 56,229,854 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,222,015 - 56,229,854 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,618,126 - 56,623,638 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,904,774 - 54,909,795 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	56,271,047 - 56,276,531 (+)	NCBI		Celera
Cytogenetic Map	12	q13.3	NCBI
HuRef	12	53,657,113 - 53,662,632 (+)	NCBI		HuRef
CHM1_1	12	56,585,507 - 56,591,029 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,189,608 - 56,197,479 (+)	NCBI		T2T-CHM13v2.0

Nabp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,237,263 - 128,247,426 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,237,264 - 128,247,361 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,401,394 - 128,411,548 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,401,395 - 128,411,492 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	127,838,451 - 127,846,852 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,804,344 - 127,812,745 (-)	NCBI		MGSCv36	mm8
Celera	10	130,789,654 - 130,798,110 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	76.55	NCBI

Nabp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,415,491 - 1,421,113 (-)	NCBI		GRCr8
mRatBN7.2	7	830,949 - 836,551 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	830,949 - 838,027 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,592,698 - 3,598,487 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,468,679 - 5,474,468 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,766,472 - 5,772,113 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,820,006 - 2,825,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,820,007 - 2,825,608 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	2,798,470 - 2,805,462 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,693,100 - 1,698,698 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,693,101 - 1,700,198 (-)	NCBI
Celera	7	704,441 - 710,047 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

NABP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,102,226 - 38,110,124 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,098,994 - 38,106,892 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,685,521 - 32,693,318 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	32,937,021 - 32,944,754 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	32,937,017 - 32,944,754 (-)	Ensembl	panpan1.1		panPan2

NABP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	546,964 - 551,360 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	546,964 - 551,107 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	610,252 - 614,763 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	555,475 - 559,986 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	555,497 - 559,985 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	532,929 - 537,437 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	775,919 - 780,430 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	899,977 - 904,490 (+)	NCBI		UU_Cfam_GSD_1.0

Nabp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,231,335 - 58,237,872 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	632,121 - 639,868 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	632,390 - 638,900 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NABP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,624,762 - 21,631,706 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,624,654 - 21,631,716 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,036,416 - 23,043,271 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NABP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,176,021 - 52,183,204 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	52,177,987 - 52,182,572 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	193,803,203 - 193,810,731 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nabp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	11,774,237 - 11,780,250 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	11,774,237 - 11,780,822 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013520830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01047350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01064071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000019096 ⟹ ENSCLAP00000018911

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955458	3,835,205 - 3,840,634 (+)	Ensembl

RefSeq Acc Id:

XM_013520830 ⟹ XP_013376284

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955458	3,835,205 - 3,836,841 (+)	NCBI

Sequence:

show sequence

CGGTGGGGGGTGGGGGATGGATCGAGCCTCGGGTCGTTCGGATGGGGGTTCGGATGGGGGTTCG
GATGGGGGTTCGGGAAGGCCTGGCGGGTAAGATTCCACGCCTTGGCTCTGCACCGGACCCTCCA
CCCCTGGCTGCGTCGGCTCCCTACTTAGGAGCGAGAGCCCGAAAGAGCATCCCGACAGGGGGCC
TTCCAGCCCCGAAGCATCTCGTCCGGAGACCCCCAGTGCTAACCTTGAAGTTCGAGGCCCCCGG
GGGAGTTCGCTTCTAACCTTCTGTAAGGCTAAAGGGGCCGAGGCTGCCCGGTCCTAGCTTGGTT
TGGTAGGTAGGCCTTGGGGAGTGGAGCATGGGGCAGAGCGCCCGGCGTTCAGCCTTCATCCCCT
GTTCCCCCTGCCAGTGGGGTGCCGACGCGCGGGCAGCATGACTACGGAAACCTTCGTGAAGGAC
ATCAAGCCGGGGCTGAAGAATCTGAACCTCATCTTCATTGTGCTGGAGACAGGTCGAGTGACCA
AGACAAAGGACGGGCACGAGGTTCGGACCTGCAAAGTGGCCGACAAAACTGGCAGCATCAATAT
CTCTGTCTGGGACGACGTGGGCAACCTGATCCAGCCCGGGGATATCATCCGACTCACCAAAGGG
TATGCGTCAGTGTTCAAAGGTTGTCTGACTCTGTACACTGGCCGTGGGGGCGATCTGCAGAAGA
TTGGAGAATTCTGTATGGTTTATTCTGAGGTTCCTAACTTCAGTGAGCCCAACCCGGAGTACAG
CACCCAGCAGGCACCCAGCAAAGCTGTGCAGAACGACAACAGCCCTACAGCCGCCCAGGCTGCC
CCCGGACCCCCTGCAGTCTCTCCAGCTGCTGAGAGCCAGAACGGGAACGGACTGAGCGCCCCGC
CCGGCCCCGGCGGAGGCCCGCACCCCGCCCACGCGGCCCCGCACCCGCCCAGCACGCGGATCAC
GCGGAGCCAGCCCGGCCACGCGGCGGCCGGCCCGCCCGGCGCCTCCGGCAGCGCGGTCAGCAAC
GGCAAGGAGACCCGCAGGAGCGGCAAGAGATAGGAGCCGCCCGCCCCCGCCCGGAGCCTGCGGA
GGGCGCCGTGGGCTGCGGCTGTGGGACCCGAGGGCCGGCGGCAGGACTGTAGCCACGGAGCGCC
CCGGGAGGGTGGTGCGCGCCGGAGCCGCCGTGCCCTCCCGGAGCCGCCTCCGCCTCTCCCGCGG
GTGCGCGATGTGAGCGCCTAAACGAAGTCCTTCCGAATAAACGTTTCCGCTCCGAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013376284	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018911
	ENSCLAP00000018911.1

RefSeq Acc Id:

XP_013376284 ⟸ XM_013520830

- Sequence:

show sequence

MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQP
GDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYSTQQAPSKAVQND
NSPTAAQAAPGPPAVSPAAESQNGNGLSAPPGPGGGPHPAHAAPHPPSTRITRSQPGHAAAGPP
GASGSAVSNGKETRRSGKR

hide sequence

RefSeq Acc Id:

ENSCLAP00000018911 ⟸ ENSCLAT00000019096

Protein Domains

Single-stranded DNA binding protein Ssb-like OB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012948	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000019096	ENTREZGENE
	ENSCLAT00000019096.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
InterPro	NA-bd_OB-fold	UniProtKB/TrEMBL
	Ssb-like_OB	UniProtKB/TrEMBL
NCBI Gene	Nabp2	ENTREZGENE
PANTHER	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	UniProtKB/TrEMBL
	SOSS COMPLEX SUBUNIT B1	UniProtKB/TrEMBL
Pfam	Ssb-like_OB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
UniProt	A0A8C2VX36_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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