Dnal1 (dynein axonemal light chain 1)

Gene: Dnal1 (dynein axonemal light chain 1) Chinchilla lanigera

Analyze

Symbol:

Dnal1

Name:

dynein axonemal light chain 1

RGD ID:

8943486

Description:

ENCODES a protein that exhibits alpha-tubulin binding (ortholog); dynein heavy chain binding (ortholog); INVOLVED IN outer dynein arm assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Kartagener syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

dynein light chain 1, axonemal; dynein, axonemal, light chain 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,678,951 - 1,719,468 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	1,682,955 - 1,719,468 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Kartagener syndrome (ISO)

primary ciliary dyskinesia (ISO)

primary ciliary dyskinesia 16 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

outer dynein arm assembly (ISO)

Molecular Function

alpha-tubulin binding (ISO)

dynein heavy chain binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Dnal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,678,951 - 1,719,468 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	1,682,955 - 1,719,468 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	73,644,986 - 73,703,732 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	73,644,875 - 73,703,732 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	74,111,689 - 74,170,435 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,181,455 - 73,232,950 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	73,181,454 - 73,232,945	NCBI
Celera	14	54,147,655 - 54,204,739 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	54,279,296 - 54,337,917 (+)	NCBI		HuRef
CHM1_1	14	74,051,139 - 74,109,973 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	67,852,479 - 67,911,268 (+)	NCBI		T2T-CHM13v2.0

Dnal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,161,057 - 84,190,291 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,161,140 - 84,194,272 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	84,114,279 - 84,143,517 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,114,366 - 84,147,498 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	85,455,278 - 85,484,467 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,004,119 - 85,028,205 (+)	NCBI		MGSCv36	mm8
Celera	12	85,561,148 - 85,590,364 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.05	NCBI

Dnal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,478,941 - 109,515,201 (+)	NCBI		GRCr8
mRatBN7.2	6	103,747,801 - 103,779,015 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	103,747,753 - 103,778,878 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	103,909,608 - 103,935,833 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,208,829 - 104,234,920 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,578,275 - 103,604,506 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	107,596,785 - 107,623,869 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	107,596,782 - 107,625,214 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,912,885 - 117,939,781 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,164,166 - 108,190,405 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	101,576,910 - 101,603,128 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

DNAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	74,733,951 - 74,793,849 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	73,951,477 - 74,005,938 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,204,306 - 54,258,747 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,062,108 - 73,119,790 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	73,062,108 - 73,112,026 (+)	Ensembl	panpan1.1		panPan2

DNAL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	46,924,284 - 46,964,249 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	46,924,395 - 46,963,227 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	46,608,595 - 46,647,865 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,153,326 - 47,193,248 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,153,396 - 47,197,469 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	46,820,861 - 46,860,107 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	46,839,156 - 46,878,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,229,631 - 47,268,898 (+)	NCBI		UU_Cfam_GSD_1.0

Dnal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	29,079,316 - 29,117,310 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	2,951,521 - 2,989,773 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	2,951,681 - 2,989,787 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	96,999,602 - 97,047,090 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	96,999,526 - 97,047,102 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	102,691,104 - 102,733,670 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	50,851,756 - 50,904,590 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	50,868,828 - 50,903,859 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	39,040,480 - 39,127,361 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	27,854,031 - 27,885,696 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	27,844,412 - 27,885,770 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01068538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01123019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000005626 ⟹ ENSCLAP00000005525

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955523	1,678,951 - 1,719,468 (-)	Ensembl

RefSeq Acc Id:

XM_005409414 ⟹ XP_005409471

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,682,955 - 1,719,468 (-)	NCBI

Sequence:

show sequence

CGAGCGGCGGGAGTGCGCACGCGCACTGACCCCGGCGGGCCCTAGCAACCAGAGCAGTGACAGT
AGCAACCGCTGGAATGGCAAAAGCAACAACAATCAAAGAAGCCTTAGCCAGATGGGAAGAGAAG
ACTGGTCAGAGGCCATCTGAAGCCAAAGAGATAAAGCTTTACGCCCAGATCCCTCCAATAGAGA
AGATGGACGCCTCCTTGTCCACACTCGCTAACTGCGAGAAGCTTTCACTGTCTACAAATTGCAT
TGAAAAAATTGCCAACCTGAATGGCTTAAAAAACTTGAGGATATTGTCTTTAGGAAGAAACAAC
ATAAAGAACTTAAATGGACTGGAAGCTGTAGGGGACACCTTAGAAGAACTGTGGATCTCCTACA
ATTTTATCGAAAAGTTGAAAGGGATCCATGTAATGAAAAAACTGAAGATTCTCTACATGTCTAA
TAACCTGGTGAAAGACTGGGCTGAGTTTGTGAAGCTGACAGACCTGCCGTGCCTGGAAGACCTG
GTGTTCGTCGGCAACCCTCTGGAAGAGAAACACACTGCTGAGGGTAACTGGATTGAGGAGGCCA
CCAAGAGAGTGCCCAAGCTCAAAAAGCTGGATGGTACTCCAGTAATTAAACAGGATGAGGAAGA
AGAAAATTAACACCATATTTTTCTCTTTGTGTTAACTTATTTAAATGTCATGAGAACAGTAGAT
AAGTTTGTATAATTCTCTATTTTAAGGATTTTGTGTGGGACAGAAAGTTCTTAAAAGAAATCTC
ACTTCCAATGTTTTTTTAAACCTATCCAGTGTTTCTCCCCAAAACTGCTAACACCGACTTTGTA
TAGTCTCGTTCTCTTTTTGGAAACTAACTTTTCCATTTTTGTCTTCATTCCCCATCATTGAAAT
ATGTACACCAATCATTTTAAGAGCAAAGGAACAAACATTGTTTATTCAGTTTGCTTAGTAATTT
TTAAGCCAGACATTTGAAAACACACGCTTGTGAGTCTGTAGAAGGTCCCTCTCCTATGCCTCAG
AAGCACAAACGTATCGTGCCGTTGGTCCTGAAGGGAGCGTGGCGGTGGAAGCAGCACCTCTCAG
AGATACGTACAGCGGCAGTCTTGGAACCCAGACTCCAAAGCCCTGCTGGAAACAGCTGTGGTGC
ACAAAGGAAGAATTAGTATCTCAGAGGCCTTCTAGCCCACCTTATATTTATTCATTTGTTTTTC
AAAAAAACGTGTAGATTGTCAACTGGAATTTAGGTTGTGTTTACATGTGTGGCCACGAGTCACT
GTGTATGTATAGTCAGTCATTCTGGGACCCAGGTCAGCGGGGAAAATGACCGTCACGGCCCTCC
TTTGACCGATAGCGTGGCCGTGTGACTCATGTGGCCCTGGCCTGAAGCACATGTTTTTGGTTTA
TGGCTCCTTATAGTTGAAGTCGTAGCTCTAGCCTAATCATCAGCCACTGACAGGCATCACAATT
TGCCCCAATGATTTGGTGTCCTGATCCTCATGAAGGTTAGAAGGGTATGGACTGAAGACTGAAC
TTGGTACTTCTCAATAAATGAAGATTGTGTTCCAATATATATA

hide sequence

RefSeq Acc Id:

XM_005409415 ⟹ XP_005409472

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955523	1,682,955 - 1,719,467 (-)	NCBI

Sequence:

show sequence

GAGCGGCGGGAGTGCGCACGCGCACTGACCCCGGCGGGCCCTAGCAACCAGAGCAGTGACAGTA
GCAACCGCTGGAATGGAAGAGAAGACTGGTCAGAGGCCATCTGAAGCCAAAGAGATAAAGCTTT
ACGCCCAGATCCCTCCAATAGAGAAGATGGACGCCTCCTTGTCCACACTCGCTAACTGCGAGAA
GCTTTCACTGTCTACAAATTGCATTGAAAAAATTGCCAACCTGAATGGCTTAAAAAACTTGAGG
ATATTGTCTTTAGGAAGAAACAACATAAAGAACTTAAATGGACTGGAAGCTGTAGGGGACACCT
TAGAAGAACTGTGGATCTCCTACAATTTTATCGAAAAGTTGAAAGGGATCCATGTAATGAAAAA
ACTGAAGATTCTCTACATGTCTAATAACCTGGTGAAAGACTGGGCTGAGTTTGTGAAGCTGACA
GACCTGCCGTGCCTGGAAGACCTGGTGTTCGTCGGCAACCCTCTGGAAGAGAAACACACTGCTG
AGGGTAACTGGATTGAGGAGGCCACCAAGAGAGTGCCCAAGCTCAAAAAGCTGGATGGTACTCC
AGTAATTAAACAGGATGAGGAAGAAGAAAATTAACACCATATTTTTCTCTTTGTGTTAACTTAT
TTAAATGTCATGAGAACAGTAGATAAGTTTGTATAATTCTCTATTTTAAGGATTTTGTGTGGGA
CAGAAAGTTCTTAAAAGAAATCTCACTTCCAATGTTTTTTTAAACCTATCCAGTGTTTCTCCCC
AAAACTGCTAACACCGACTTTGTATAGTCTCGTTCTCTTTTTGGAAACTAACTTTTCCATTTTT
GTCTTCATTCCCCATCATTGAAATATGTACACCAATCATTTTAAGAGCAAAGGAACAAACATTG
TTTATTCAGTTTGCTTAGTAATTTTTAAGCCAGACATTTGAAAACACACGCTTGTGAGTCTGTA
GAAGGTCCCTCTCCTATGCCTCAGAAGCACAAACGTATCGTGCCGTTGGTCCTGAAGGGAGCGT
GGCGGTGGAAGCAGCACCTCTCAGAGATACGTACAGCGGCAGTCTTGGAACCCAGACTCCAAAG
CCCTGCTGGAAACAGCTGTGGTGCACAAAGGAAGAATTAGTATCTCAGAGGCCTTCTAGCCCAC
CTTATATTTATTCATTTGTTTTTCAAAAAAACGTGTAGATTGTCAACTGGAATTTAGGTTGTGT
TTACATGTGTGGCCACGAGTCACTGTGTATGTATAGTCAGTCATTCTGGGACCCAGGTCAGCGG
GGAAAATGACCGTCACGGCCCTCCTTTGACCGATAGCGTGGCCGTGTGACTCATGTGGCCCTGG
CCTGAAGCACATGTTTTTGGTTTATGGCTCCTTATAGTTGAAGTCGTAGCTCTAGCCTAATCAT
CAGCCACTGACAGGCATCACAATTTGCCCCAATGATTTGGTGTCCTGATCCTCATGAAGGTTAG
AAGGGTATGGACTGAAGACTGAACTTGGTACTTCTCAATAAATGAAGATTGTGTTCCAATATAT
ATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409471	(Get FASTA)	NCBI Sequence Viewer
	XP_005409472	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000005525
	ENSCLAP00000005525.1

RefSeq Acc Id:	XP_005409471 ⟸ XM_005409414
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UVR0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKATTIKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSTLANCEKLSLSTNCIEKIA NLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHVMKKLKILYMSNNLVK DWAEFVKLTDLPCLEDLVFVGNPLEEKHTAEGNWIEEATKRVPKLKKLDGTPVIKQDEEEEN hide sequence

RefSeq Acc Id:	XP_005409472 ⟸ XM_005409415
- Peptide Label:	isoform X2
- Sequence:	show sequence MEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSTLANCEKLSLSTNCIEKIANLNGLKNLRILSL GRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHVMKKLKILYMSNNLVKDWAEFVKLTDLPC LEDLVFVGNPLEEKHTAEGNWIEEATKRVPKLKKLDGTPVIKQDEEEEN hide sequence

RefSeq Acc Id:

ENSCLAP00000005525 ⟸ ENSCLAT00000005626

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003917	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000005626	ENTREZGENE
	ENSCLAT00000005626.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_4	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Dnal1	ENTREZGENE
PANTHER	DYNEIN AXONEMAL LIGHT CHAIN 1	UniProtKB/TrEMBL
	NISCHARIN RELATED	UniProtKB/TrEMBL
Pfam	LRR_4	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_SD22	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8C2UVR0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Dnal1	dynein axonemal light chain 1		dynein, axonemal, light chain 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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