Ubn2 (ubinuclein 2) - Rat Genome Database

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Gene: Ubn2 (ubinuclein 2) Chinchilla lanigera
Analyze
Symbol: Ubn2
Name: ubinuclein 2
RGD ID: 8942216
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubinuclein-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,758,616 - 3,834,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,734,414 - 3,828,174 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ubn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,758,616 - 3,834,887 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,734,414 - 3,828,174 (-)NCBIChiLan1.0ChiLan1.0
UBN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,231,237 - 139,330,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,230,356 - 139,308,236 (+)EnsemblGRCh38hg38GRCh38
GRCh377138,915,983 - 138,992,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,566,991 - 138,643,522 (+)NCBINCBI36Build 36hg18NCBI36
Celera7133,654,387 - 133,731,150 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,226,153 - 133,302,818 (+)NCBIHuRef
CHM1_17138,849,976 - 138,926,728 (+)NCBICHM1_1
T2T-CHM13v2.07140,544,524 - 140,642,706 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,260,797 - 138,337,551 (+)NCBI
Ubn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,410,860 - 38,489,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,410,885 - 38,501,760 (+)EnsemblGRCm39 Ensembl
GRCm38638,433,925 - 38,512,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,433,950 - 38,524,825 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,383,925 - 38,462,763 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,363,558 - 38,432,208 (+)NCBIMGSCv36mm8
Celera638,414,640 - 38,493,684 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.79NCBI
Ubn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,130,497 - 68,218,471 (+)NCBIGRCr8
mRatBN7.2467,165,278 - 67,251,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,166,346 - 67,230,491 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,107,959 - 72,171,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0468,029,054 - 68,093,070 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,426,812 - 66,490,803 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,164,639 - 66,254,297 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,165,845 - 66,233,230 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,976,696 - 66,065,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,999,406 - 66,064,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1466,275,556 - 66,339,887 (+)NCBI
Celera462,184,683 - 62,248,122 (+)NCBICelera
Cytogenetic Map4q23NCBI
UBN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,030,630 - 176,111,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,044,251 - 28,121,335 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,179,164 - 131,256,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,664,282 - 143,741,053 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,664,596 - 143,730,647 (+)Ensemblpanpan1.1panPan2
UBN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,446,345 - 9,510,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,446,345 - 9,510,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,284,611 - 10,352,577 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,343,004 - 9,430,188 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,344,195 - 9,429,826 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,293,499 - 9,380,630 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,137,439 - 9,224,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,208,600 - 9,295,741 (-)NCBIUU_Cfam_GSD_1.0
Ubn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511815,657,534 - 15,736,458 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,483,373 - 3,553,618 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,483,124 - 3,554,890 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,377,077 - 10,451,255 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,371,121 - 10,451,243 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,841,038 - 10,933,658 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,974,621 - 108,075,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21107,975,193 - 108,043,523 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660724,802,477 - 4,902,105 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,628,458 - 19,756,040 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,627,442 - 19,737,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001447   ⟹   ENSCLAP00000001405
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554943,758,616 - 3,834,887 (-)Ensembl
RefSeq Acc Id: XM_013504945   ⟹   XP_013360399
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,754,571 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504946   ⟹   XP_013360400
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,754,571 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504947   ⟹   XP_013360401
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,754,571 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504948   ⟹   XP_013360402
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,754,571 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504949   ⟹   XP_013360403
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,734,414 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001231311
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,734,414 - 3,828,174 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001231312
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,744,535 - 3,828,174 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013360403   ⟸   XM_013504949
- Peptide Label: isoform X5
- UniProtKB: A0A8C2UJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360402   ⟸   XM_013504948
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360400   ⟸   XM_013504946
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360401   ⟸   XM_013504947
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360399   ⟸   XM_013504945
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UJD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001405   ⟸   ENSCLAT00000001447
Protein Domains
Hpc2-related   Ubinuclein middle


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001065 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001447 ENTREZGENE
  ENSCLAT00000001447.1 UniProtKB/TrEMBL
InterPro HRD UniProtKB/TrEMBL
  UBN_middle_dom UniProtKB/TrEMBL
NCBI Gene Ubn2 ENTREZGENE
PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS UniProtKB/TrEMBL
  PTHR21669:SF10 UniProtKB/TrEMBL
Pfam HUN UniProtKB/TrEMBL
  UBN_AB UniProtKB/TrEMBL
UniProt A0A8C2UJD4 ENTREZGENE, UniProtKB/TrEMBL