Gbf1 (golgi brefeldin A resistant guanine nucleotide exchange factor 1) - Rat Genome Database
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Gene: Gbf1 (golgi brefeldin A resistant guanine nucleotide exchange factor 1) Chinchilla lanigera
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Symbol: Gbf1
Name: golgi brefeldin A resistant guanine nucleotide exchange factor 1
RGD ID: 8940998
Description: ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN cell activation involved in immune response (ortholog); cellular response to virus (ortholog); COPI coating of Golgi vesicle (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; ASSOCIATED WITH axonal neuropathy (ortholog); FOUND IN cell leading edge (ortholog); cis-Golgi network (ortholog); endoplasmic reticulum lumen (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,006,706 - 8,115,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Gbf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554858,006,706 - 8,115,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBIChiLan1.0ChiLan1.0
GBF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10102,245,371 - 102,382,899 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl10102,245,532 - 102,382,899 (+)EnsemblGRCh38hg38GRCh38
GRCh3810102,245,531 - 102,382,899 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710104,005,255 - 104,142,656 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh3710104,005,289 - 104,142,653 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610103,995,299 - 104,132,639 (+)NCBINCBI36hg18NCBI36
Build 3410103,995,298 - 104,132,639NCBI
Celera1097,746,227 - 97,883,548 (+)NCBI
Cytogenetic Map10q24.32NCBI
HuRef1097,637,542 - 97,775,465 (+)NCBIHuRef
CHM1_110104,288,779 - 104,426,082 (+)NCBICHM1_1
Gbf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391946,140,948 - 46,274,949 (+)NCBIGRCm39mm39
GRCm381946,152,509 - 46,286,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1946,152,509 - 46,286,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv371946,227,048 - 46,361,000 (+)NCBIGRCm37mm9NCBIm37
MGSCv361946,205,869 - 46,339,821 (+)NCBImm8
Celera1946,916,366 - 47,049,730 (+)NCBICelera
Cytogenetic Map19C3NCBI
Gbf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21245,018,535 - 245,147,052 (+)NCBI
Rnor_6.0 Ensembl1265,904,566 - 266,033,156 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01265,904,616 - 266,033,107 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01273,334,980 - 273,464,048 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41251,373,242 - 251,501,663 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11251,723,054 - 251,763,642 (+)NCBI
Celera1240,801,947 - 240,930,218 (+)NCBICelera
Cytogenetic Map1q54NCBI
GBF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110102,316,329 - 102,452,439 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10102,316,329 - 102,452,439 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01098,849,000 - 98,986,443 (+)NCBIMhudiblu_PPA_v0panPan3
GBF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2814,788,369 - 14,895,978 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12814,775,431 - 14,896,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Gbf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366003,479,045 - 3,604,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GBF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14113,245,499 - 113,379,474 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114113,245,486 - 113,379,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214123,099,432 - 123,233,891 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GBF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1995,281,953 - 95,416,050 (+)NCBI
ChlSab1.1 Ensembl995,281,954 - 95,416,086 (+)Ensembl
Gbf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248311,665,507 - 1,801,409 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006228   ⟹   ENSCLAP00000006125
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554858,006,706 - 8,115,561 (-)Ensembl
RefSeq Acc Id: XM_005403846   ⟹   XP_005403903
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005403847   ⟹   XP_005403904
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005403848   ⟹   XP_005403905
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,125,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005403849   ⟹   XP_005403906
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005403850   ⟹   XP_005403907
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005403851   ⟹   XP_005403908
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554858,006,161 - 8,126,074 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005403908   ⟸   XM_005403851
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005403906   ⟸   XM_005403849
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005403907   ⟸   XM_005403850
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005403903   ⟸   XM_005403846
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005403904   ⟸   XM_005403847
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005403905   ⟸   XM_005403848
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000006125   ⟸   ENSCLAT00000006228


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004338 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000006125 ENTREZGENE
Ensembl Transcript ENSCLAT00000006228 ENTREZGENE
NCBI Gene Gbf1 ENTREZGENE