Cabp1 (calcium binding protein 1) - Rat Genome Database

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Gene: Cabp1 (calcium binding protein 1) Chinchilla lanigera
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Symbol: Cabp1
Name: calcium binding protein 1
RGD ID: 8940674
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN modification of postsynaptic actin cytoskeleton (ortholog); negative regulation of cell communication by electrical coupling (ortholog); negative regulation of protein import into nucleus (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); schizophrenia (ortholog); Serotonin Syndrome (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: calcium-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545511,000,763 - 11,068,922 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Cabp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545511,000,763 - 11,068,922 (-)NCBIChiLan1.0ChiLan1.0
CABP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12120,640,552 - 120,667,324 (+)EnsemblGRCh38hg38GRCh38
GRCh3812120,640,552 - 120,680,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712121,078,422 - 121,105,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612119,562,805 - 119,589,510 (+)NCBINCBI36hg18NCBI36
Build 3412119,551,090 - 119,567,845NCBI
Celera12120,712,715 - 120,739,394 (+)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12118,087,780 - 118,114,466 (+)NCBIHuRef
CHM1_112121,047,209 - 121,073,905 (+)NCBICHM1_1
Cabp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395115,306,750 - 115,332,440 (-)NCBIGRCm39mm39
GRCm39 Ensembl5115,306,748 - 115,332,440 (-)Ensembl
GRCm385115,168,691 - 115,194,381 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5115,168,689 - 115,194,381 (-)EnsemblGRCm38mm10GRCm38
MGSCv375115,618,700 - 115,636,130 (-)NCBIGRCm37mm9NCBIm37
MGSCv365115,429,955 - 115,447,120 (-)NCBImm8
Celera5112,265,082 - 112,282,516 (-)NCBICelera
Cytogenetic Map5FNCBI
Cabp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21241,385,234 - 41,448,930 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1241,378,897 - 41,448,927 (+)Ensembl
Rnor_6.01247,185,449 - 47,209,785 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1247,179,664 - 47,209,784 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01248,980,523 - 49,004,882 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41242,696,383 - 42,720,566 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11242,568,234 - 42,583,529 (+)NCBI
Celera1243,043,462 - 43,067,622 (+)NCBICelera
Cytogenetic Map12q16NCBI
CABP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112121,605,979 - 121,623,960 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v012118,224,046 - 118,250,696 (+)NCBIMhudiblu_PPA_v0panPan3
CABP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12616,492,484 - 16,523,265 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2616,494,980 - 16,525,873 (+)NCBI
ROS_Cfam_1.02616,758,371 - 16,789,256 (+)NCBI
UMICH_Zoey_3.12616,719,024 - 16,749,945 (+)NCBI
UNSW_CanFamBas_1.02616,794,703 - 16,825,583 (+)NCBI
UU_Cfam_GSD_1.02616,836,775 - 16,867,667 (+)NCBI
Cabp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118145,825,410 - 145,847,946 (-)NCBI
SpeTri2.0NW_004936668324,299 - 339,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11440,563,302 - 40,587,975 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21442,996,071 - 43,055,074 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CABP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111115,934,747 - 116,021,645 (+)NCBI
Vero_WHO_p1.0NW_023666037129,075,237 - 129,103,423 (-)NCBI
Cabp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474713,027,839 - 13,050,262 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005396494   ⟹   XP_005396551
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545511,000,763 - 11,068,922 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005396495   ⟹   XP_005396552
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545511,000,763 - 11,016,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005396496   ⟹   XP_005396553
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545511,000,763 - 11,068,922 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005396551 (Get FASTA)   NCBI Sequence Viewer  
  XP_005396552 (Get FASTA)   NCBI Sequence Viewer  
  XP_005396553 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005396553   ⟸   XM_005396496
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005396551   ⟸   XM_005396494
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005396552   ⟸   XM_005396495
- Peptide Label: isoform X2
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008163 ENTREZGENE
Ensembl Protein ENSCLAP00000011845 ENTREZGENE
Ensembl Transcript ENSCLAT00000011984 ENTREZGENE
NCBI Gene Cabp1 ENTREZGENE