Nebl (nebulette) - Rat Genome Database

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Gene: Nebl (nebulette) Chinchilla lanigera
Analyze
Symbol: Nebl
Name: nebulette
RGD ID: 8939684
Description: ENCODES a protein that exhibits actin filament binding (ortholog); cytoskeletal protein binding (ortholog); filamin binding (ortholog); INVOLVED IN cardiac muscle thin filament assembly (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); cardiomyopathy (ortholog); Digeorge Syndrome/Velocardiofacial Syndrome Complex 2 (ortholog); FOUND IN stress fiber (ortholog); Z disc (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554297,358,758 - 7,725,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554297,559,994 - 7,730,683 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
stress fiber  (ISO)
Z disc  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nebl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554297,358,758 - 7,725,648 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554297,559,994 - 7,730,683 (+)NCBIChiLan1.0ChiLan1.0
NEBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381020,779,973 - 21,293,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1020,779,973 - 21,293,011 (-)EnsemblGRCh38hg38GRCh38
GRCh371021,068,902 - 21,581,979 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361021,110,093 - 21,503,122 (-)NCBINCBI36Build 36hg18NCBI36
Celera1020,755,603 - 21,149,774 (-)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1020,732,574 - 21,126,423 (-)NCBIHuRef
CHM1_11021,069,266 - 21,463,405 (-)NCBICHM1_1
T2T-CHM13v2.01020,798,520 - 21,311,782 (-)NCBIT2T-CHM13v2.0
Nebl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39217,347,484 - 17,740,634 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl217,348,720 - 17,736,275 (-)EnsemblGRCm39 Ensembl
GRCm38217,342,673 - 17,734,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl217,343,909 - 17,731,464 (-)EnsemblGRCm38mm10GRCm38
MGSCv37217,268,361 - 17,652,695 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36217,264,488 - 17,648,822 (-)NCBIMGSCv36mm8
Celera217,245,443 - 17,628,584 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.43NCBI
Nebl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81785,022,953 - 85,374,848 (-)NCBIGRCr8
mRatBN7.21780,113,891 - 80,466,331 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1780,118,543 - 80,466,210 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1783,577,385 - 83,689,906 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01787,412,819 - 87,525,339 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01781,428,124 - 81,547,706 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01784,141,014 - 84,247,038 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1784,140,489 - 84,488,601 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01785,874,473 - 85,979,946 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41791,518,949 - 91,626,869 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11791,529,781 - 91,637,623 (-)NCBI
Celera1779,405,191 - 79,510,565 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
NEBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2833,464,509 - 33,860,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11033,469,832 - 33,865,599 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01020,941,514 - 21,336,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11021,238,946 - 21,632,236 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1021,244,693 - 21,632,236 (-)Ensemblpanpan1.1panPan2
NEBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1211,892,132 - 12,234,421 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl211,858,209 - 12,229,718 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha210,585,197 - 10,927,388 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0210,144,081 - 10,485,626 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl210,143,014 - 10,485,629 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.129,454,067 - 9,796,053 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.029,541,116 - 9,882,431 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.029,709,999 - 10,052,067 (+)NCBIUU_Cfam_GSD_1.0
Nebl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934420,968,220 - 21,302,353 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365206,658,920 - 6,987,116 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365206,658,555 - 6,992,643 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1053,602,936 - 53,958,047 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11053,602,929 - 53,957,869 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21059,371,370 - 59,719,071 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1920,620,745 - 20,999,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605126,340,158 - 26,720,719 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nebl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247967,133,923 - 7,493,673 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247967,133,915 - 7,498,706 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000013022   ⟹   ENSCLAP00000012873
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554297,358,758 - 7,725,648 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013023   ⟹   ENSCLAP00000012874
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554297,610,190 - 7,725,648 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013024   ⟹   ENSCLAP00000012875
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554297,612,424 - 7,670,549 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013025   ⟹   ENSCLAP00000012876
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554297,612,424 - 7,670,142 (+)Ensembl
RefSeq Acc Id: XM_013515481   ⟹   XP_013370935
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554297,559,994 - 7,730,683 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515482   ⟹   XP_013370936
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554297,610,190 - 7,730,683 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515483   ⟹   XP_013370937
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554297,610,214 - 7,730,683 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515484   ⟹   XP_013370938
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554297,559,994 - 7,730,683 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013370935   ⟸   XM_013515481
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370938   ⟸   XM_013515484
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013370936   ⟸   XM_013515482
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VAY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370937   ⟸   XM_013515483
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VAY5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012873   ⟸   ENSCLAT00000013022
RefSeq Acc Id: ENSCLAP00000012874   ⟸   ENSCLAT00000013023
RefSeq Acc Id: ENSCLAP00000012875   ⟸   ENSCLAT00000013024
RefSeq Acc Id: ENSCLAP00000012876   ⟸   ENSCLAT00000013025
Protein Domains
LIM zinc-binding   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008890 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013022.1 UniProtKB/TrEMBL
  ENSCLAT00000013023 ENTREZGENE
  ENSCLAT00000013023.1 UniProtKB/TrEMBL
  ENSCLAT00000013024.1 UniProtKB/TrEMBL
  ENSCLAT00000013025.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro Nebulette_SH3 UniProtKB/TrEMBL
  Nebulin_repeat UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
NCBI Gene Nebl ENTREZGENE
PANTHER LASP UniProtKB/TrEMBL
  LIM AND SH3 DOMAIN PROTEIN LASP UniProtKB/TrEMBL
  NEBULETTE UniProtKB/TrEMBL
  NEBULIN UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
  Nebulin UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  NEBULIN UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  NEBU UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C2VAX7_CHILA UniProtKB/TrEMBL
  A0A8C2VAY2_CHILA UniProtKB/TrEMBL
  A0A8C2VAY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VG69_CHILA UniProtKB/TrEMBL