Mrpl42 (mitochondrial ribosomal protein L42) - Rat Genome Database

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Gene: Mrpl42 (mitochondrial ribosomal protein L42) Chinchilla lanigera
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Symbol: Mrpl42
Name: mitochondrial ribosomal protein L42
RGD ID: 8939147
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN mitochondrial large ribosomal subunit (ortholog); mitochondrial small ribosomal subunit (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L42, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,287,128 - 30,311,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540530,287,124 - 30,311,175 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mrpl42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,287,128 - 30,311,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540530,287,124 - 30,311,175 (+)NCBIChiLan1.0ChiLan1.0
MRPL42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381293,467,514 - 93,516,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1293,467,514 - 93,516,214 (+)EnsemblGRCh38hg38GRCh38
GRCh371293,861,290 - 93,909,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361292,385,401 - 92,420,563 (+)NCBINCBI36Build 36hg18NCBI36
Build 341292,363,737 - 92,398,899NCBI
Celera1293,531,961 - 93,567,117 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1290,927,952 - 90,964,628 (+)NCBIHuRef
CHM1_11293,826,218 - 93,862,501 (+)NCBICHM1_1
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBIT2T-CHM13v2.0
Mrpl42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391095,316,667 - 95,337,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1095,316,667 - 95,337,802 (-)EnsemblGRCm39 Ensembl
GRCm381095,480,805 - 95,501,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1095,480,805 - 95,501,940 (-)EnsemblGRCm38mm10GRCm38
MGSCv371094,943,440 - 94,964,561 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361094,910,494 - 94,931,615 (-)NCBIMGSCv36mm8
Celera1097,456,195 - 97,477,708 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.39NCBI
Mrpl42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8732,004,863 - 32,028,640 (-)NCBIGRCr8
mRatBN7.2730,117,977 - 30,141,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,117,977 - 30,141,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx732,104,611 - 32,128,266 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0734,278,451 - 34,302,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0734,053,543 - 34,076,777 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0736,573,654 - 36,597,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,573,654 - 36,597,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0736,638,838 - 36,661,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4732,683,441 - 32,707,184NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera727,191,303 - 27,214,880 (-)NCBICelera
Cytogenetic Map7q13NCBI
MRPL42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210101,509,655 - 101,561,714 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112101,506,037 - 101,558,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01291,009,591 - 91,056,619 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11294,412,398 - 94,447,500 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1294,412,398 - 94,447,500 (+)Ensemblpanpan1.1panPan2
MRPL42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11533,701,938 - 33,732,885 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1534,152,554 - 34,183,481 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01534,372,489 - 34,403,465 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1534,372,539 - 34,403,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11533,651,033 - 33,681,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01533,740,289 - 33,771,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,004,648 - 34,035,614 (+)NCBIUU_Cfam_GSD_1.0
Mrpl42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494526,223,316 - 26,314,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365079,920,683 - 9,946,372 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365079,920,709 - 9,943,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl589,625,133 - 89,661,670 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1589,631,613 - 89,661,775 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,584,607 - 93,601,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11188,867,819 - 88,903,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1188,867,877 - 88,901,091 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037156,259,891 - 156,294,749 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475013,402,953 - 13,421,094 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000007847   ⟹   ENSCLAP00000007728
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540530,287,128 - 30,311,230 (+)Ensembl
RefSeq Acc Id: XM_005374464   ⟹   XP_005374521
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540530,287,143 - 30,311,175 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374465   ⟹   XP_005374522
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540530,287,410 - 30,311,175 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374466   ⟹   XP_005374523
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540530,288,233 - 30,311,175 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518314   ⟹   XP_013373768
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540530,287,124 - 30,311,175 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374521 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374522 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374523 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373768 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007728
  ENSCLAP00000007728.1
RefSeq Acc Id: XP_005374521   ⟸   XM_005374464
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374522   ⟸   XM_005374465
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374523   ⟸   XM_005374466
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YLM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373768   ⟸   XM_013518314
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000007728   ⟸   ENSCLAT00000007847


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005421 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007847 ENTREZGENE
  ENSCLAT00000007847.1 UniProtKB/TrEMBL
InterPro MRPL42 UniProtKB/TrEMBL
NCBI Gene Mrpl42 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L42, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR13450 UniProtKB/TrEMBL
Pfam MRP-S32 UniProtKB/TrEMBL
UniProt A0A8C2YLM4 ENTREZGENE, UniProtKB/TrEMBL