Emcn (endomucin) - Rat Genome Database

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Gene: Emcn (endomucin) Chinchilla lanigera
Analyze
Symbol: Emcn
Name: endomucin
RGD ID: 8938401
Description: ENCODES a protein that exhibits carbohydrate binding (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); thyroid gland carcinoma (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554967,413,228 - 7,498,983 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Emcn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554967,413,228 - 7,498,983 (+)NCBIChiLan1.0ChiLan1.0
EMCN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384100,395,341 - 100,518,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4100,395,341 - 100,880,126 (-)EnsemblGRCh38hg38GRCh38
GRCh374101,316,498 - 101,439,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364101,538,004 - 101,658,202 (-)NCBINCBI36Build 36hg18NCBI36
Celera498,613,843 - 98,736,427 (-)NCBICelera
Cytogenetic Map4q24NCBI
HuRef497,054,787 - 97,177,386 (-)NCBIHuRef
CHM1_14101,293,076 - 101,415,800 (-)NCBICHM1_1
T2T-CHM13v2.04103,710,663 - 103,833,329 (-)NCBIT2T-CHM13v2.0
Emcn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393137,046,824 - 137,136,830 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3137,046,828 - 137,137,946 (+)EnsemblGRCm39 Ensembl
GRCm383137,341,062 - 137,431,069 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3137,341,067 - 137,432,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv373137,004,042 - 137,094,033 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363137,278,530 - 137,368,456 (+)NCBIMGSCv36mm8
Celera3143,770,513 - 143,859,589 (+)NCBICelera
Cytogenetic Map3G3NCBI
cM Map363.65NCBI
Emcn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82228,564,445 - 228,644,370 (+)NCBIGRCr8
mRatBN7.22225,891,100 - 225,970,932 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2225,891,100 - 225,970,929 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2233,632,075 - 233,711,964 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02231,531,827 - 231,611,726 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02226,396,447 - 226,476,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02242,634,319 - 242,715,489 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2242,634,399 - 242,714,182 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02261,184,257 - 261,264,437 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42234,892,271 - 234,972,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12234,879,010 - 234,958,963 (+)NCBI
Celera2218,061,273 - 218,141,092 (+)NCBICelera
Cytogenetic Map2q43NCBI
EMCN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2398,472,000 - 98,600,507 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1498,758,149 - 98,886,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0492,813,553 - 92,942,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14103,474,788 - 103,603,125 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4103,474,788 - 103,603,125 (-)Ensemblpanpan1.1panPan2
EMCN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13222,225,159 - 22,320,240 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3222,226,042 - 22,320,063 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3219,573,324 - 19,697,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03222,421,149 - 22,540,785 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3222,446,561 - 22,540,615 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13222,397,364 - 22,521,292 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03222,183,328 - 22,303,339 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03217,563,776 - 17,683,700 (+)NCBIUU_Cfam_GSD_1.0
Emcn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530119,204,631 - 19,310,390 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365202,547,963 - 2,653,861 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365202,548,042 - 2,653,649 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMCN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8120,145,804 - 120,230,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18120,174,091 - 120,227,971 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28129,169,164 - 129,176,656 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EMCN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1748,523,083 - 48,637,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl748,520,708 - 48,637,631 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603726,994,482 - 27,110,633 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emcn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248306,917,405 - 7,002,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248306,917,397 - 7,001,915 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005406259   ⟹   XP_005406316
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554967,413,228 - 7,498,983 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005406260   ⟹   XP_005406317
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554967,413,229 - 7,498,983 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406316 (Get FASTA)   NCBI Sequence Viewer  
  XP_005406317 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003613
  ENSCLAP00000003613.1
RefSeq Acc Id: XP_005406316   ⟸   XM_005406259
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005406317   ⟸   XM_005406260
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UV56 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002576 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003687 ENTREZGENE
  ENSCLAT00000003687.1 UniProtKB/TrEMBL
InterPro Endomucin UniProtKB/TrEMBL
NCBI Gene Emcn ENTREZGENE
PANTHER ENDOMUCIN UniProtKB/TrEMBL
  PTHR15869 UniProtKB/TrEMBL
Pfam Endomucin UniProtKB/TrEMBL
UniProt A0A8C2UV56 ENTREZGENE, UniProtKB/TrEMBL