Cyfip2 (cytoplasmic FMR1 interacting protein 2) - Rat Genome Database

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Gene: Cyfip2 (cytoplasmic FMR1 interacting protein 2) Chinchilla lanigera
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Symbol: Cyfip2
Name: cytoplasmic FMR1 interacting protein 2
RGD ID: 8937609
Description: INVOLVED IN activation of cysteine-type endopeptidase activity (ortholog); apoptotic process (ortholog); cell-cell adhesion (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 65 (ortholog); Developmental Disabilities (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog); SCAR complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cytoplasmic FMR1-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,462,837 - 11,588,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,483,891 - 11,586,628 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Cyfip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,462,837 - 11,588,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,483,891 - 11,586,628 (+)NCBIChiLan1.0ChiLan1.0
CYFIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5157,266,079 - 157,395,595 (+)EnsemblGRCh38hg38GRCh38
GRCh385157,266,091 - 157,395,594 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375156,693,133 - 156,822,602 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365156,625,669 - 156,755,184 (+)NCBINCBI36hg18NCBI36
Build 345156,628,929 - 156,752,793NCBI
Celera5152,719,640 - 152,849,168 (+)NCBI
Cytogenetic Map5q33.3NCBI
HuRef5151,780,753 - 151,910,647 (+)NCBIHuRef
CHM1_15156,125,748 - 156,255,279 (+)NCBICHM1_1
Cyfip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,084,676 - 46,203,686 (-)NCBIGRCm39mm39
GRCm39 Ensembl1146,084,677 - 46,203,686 (-)Ensembl
GRCm381146,193,849 - 46,312,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,193,850 - 46,312,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,007,360 - 46,125,852 (-)NCBIGRCm37mm9NCBIm37
MGSCv361146,037,281 - 46,155,773 (-)NCBImm8
Celera1150,779,500 - 50,898,263 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
Cyfip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21030,621,318 - 30,741,113 (-)NCBI
Rnor_6.0 Ensembl1031,278,746 - 31,419,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01031,278,746 - 31,419,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01031,097,979 - 31,198,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,321,000 - 31,443,480 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11031,324,310 - 31,444,535 (-)NCBI
Celera1030,074,331 - 30,193,168 (-)NCBICelera
Cytogenetic Map10q21NCBI
CYFIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15159,288,779 - 159,418,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,292,029 - 159,418,077 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05152,667,136 - 152,796,575 (+)NCBIMhudiblu_PPA_v0panPan3
CYFIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,769,638 - 52,875,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,743,048 - 52,880,589 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,661,797 - 52,785,745 (-)NCBI
ROS_Cfam_1.0453,206,203 - 53,330,066 (-)NCBI
UMICH_Zoey_3.1453,032,652 - 53,138,139 (-)NCBI
UNSW_CanFamBas_1.0453,139,468 - 53,263,349 (-)NCBI
UU_Cfam_GSD_1.0453,656,324 - 53,780,306 (-)NCBI
Cyfip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,310,615 - 107,431,342 (-)NCBI
SpeTri2.0NW_0049365155,759,940 - 5,880,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYFIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,852,588 - 66,001,559 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,852,584 - 66,001,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,707,184 - 71,865,915 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYFIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12359,661,045 - 59,794,717 (+)NCBI
ChlSab1.1 Ensembl2359,661,089 - 59,794,826 (+)Ensembl
Vero_WHO_p1.0NW_02366603417,835,766 - 17,969,652 (-)NCBI
Cyfip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473331,996,717 - 32,115,571 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017220   ⟹   ENSCLAP00000017053
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540811,462,837 - 11,588,378 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017221   ⟹   ENSCLAP00000017054
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540811,462,837 - 11,588,378 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017222   ⟹   ENSCLAP00000017055
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540811,482,037 - 11,588,378 (+)Ensembl
RefSeq Acc Id: XM_013508767   ⟹   XP_013364221
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540811,483,891 - 11,586,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013508777   ⟹   XP_013364231
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540811,483,891 - 11,586,628 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364221 (Get FASTA)   NCBI Sequence Viewer  
  XP_013364231 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013364231   ⟸   XM_013508777
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013364221   ⟸   XM_013508767
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000017055   ⟸   ENSCLAT00000017222
RefSeq Acc Id: ENSCLAP00000017053   ⟸   ENSCLAT00000017220
RefSeq Acc Id: ENSCLAP00000017054   ⟸   ENSCLAT00000017221


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011702 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017053 ENTREZGENE
  ENSCLAP00000017055 ENTREZGENE
Ensembl Transcript ENSCLAT00000017220 ENTREZGENE
  ENSCLAT00000017222 ENTREZGENE
NCBI Gene Cyfip2 ENTREZGENE