Fam227b (family with sequence similarity 227 member B) - Rat Genome Database

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Gene: Fam227b (family with sequence similarity 227 member B) Chinchilla lanigera
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Symbol: Fam227b
Name: family with sequence similarity 227 member B
RGD ID: 8937460
Description: ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 227, member B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,586,362 - 4,770,684 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,568,562 - 4,769,010 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Fam227b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,586,362 - 4,770,684 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,568,562 - 4,769,010 (+)NCBIChiLan1.0ChiLan1.0
FAM227B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381549,326,970 - 49,620,818 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1549,326,962 - 49,620,929 (-)EnsemblGRCh38hg38GRCh38
GRCh371549,619,167 - 49,913,015 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,407,882 - 47,700,410 (-)NCBINCBI36Build 36hg18NCBI36
Celera1526,514,181 - 26,806,352 (-)NCBICelera
Cytogenetic Map15q21.2NCBI
HuRef1526,452,555 - 26,744,717 (-)NCBIHuRef
CHM1_11549,738,707 - 50,031,123 (-)NCBICHM1_1
T2T-CHM13v2.01547,135,181 - 47,429,199 (-)NCBIT2T-CHM13v2.0
Fam227b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,825,403 - 125,994,048 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,825,403 - 125,993,924 (-)EnsemblGRCm39 Ensembl
GRCm382125,983,473 - 126,152,153 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,983,483 - 126,152,004 (-)EnsemblGRCm38mm10GRCm38
MGSCv372125,809,364 - 125,971,987 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2127,226,998 - 127,392,686 (-)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Fam227b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83133,686,602 - 133,845,793 (-)NCBIGRCr8
mRatBN7.23113,226,662 - 113,392,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,233,205 - 113,392,320 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3117,108,579 - 117,274,970 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03125,704,097 - 125,870,487 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,364,465 - 123,530,852 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03118,268,631 - 118,427,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,268,739 - 118,427,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,793,104 - 124,952,316 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,417,959 - 113,580,734 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13113,323,531 - 113,486,264 (-)NCBI
Celera3112,085,885 - 112,244,772 (-)NCBICelera
Cytogenetic Map3q36NCBI
FAM227B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21638,570,276 - 38,870,424 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11542,754,310 - 43,054,268 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01528,454,626 - 28,578,566 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11546,600,303 - 46,899,355 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1546,614,922 - 46,896,481 (-)Ensemblpanpan1.1panPan2
FAM227B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,494,235 - 15,683,446 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,494,225 - 15,683,449 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3015,419,462 - 15,610,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03015,638,387 - 15,827,252 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3015,638,377 - 15,827,184 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13015,561,781 - 15,750,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03015,676,750 - 15,866,026 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03015,781,476 - 15,972,578 (-)NCBIUU_Cfam_GSD_1.0
Fam227b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864093,724,024 - 93,951,924 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647111,730,943 - 11,800,084 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM227B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,149,486 - 122,373,470 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,139,343 - 122,373,488 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21135,810,056 - 135,910,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM227B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,510,707 - 33,973,965 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048107,155,547 - 107,515,292 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam227b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473110,360,343 - 10,533,408 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000013106   ⟹   ENSCLAP00000012956
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554094,586,362 - 4,770,684 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013107   ⟹   ENSCLAP00000012957
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554094,586,362 - 4,757,143 (+)Ensembl
RefSeq Acc Id: XM_005376688   ⟹   XP_005376745
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554094,568,562 - 4,753,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005376689   ⟹   XP_005376746
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554094,568,701 - 4,769,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510294   ⟹   XP_013365748
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554094,568,562 - 4,751,704 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005376745 (Get FASTA)   NCBI Sequence Viewer  
  XP_005376746 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365748 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012956
  ENSCLAP00000012956.1
  ENSCLAP00000012957
  ENSCLAP00000012957.1
RefSeq Acc Id: XP_005376745   ⟸   XM_005376688
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VGE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376746   ⟸   XM_005376689
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VDB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013365748   ⟸   XM_013510294
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000012956   ⟸   ENSCLAT00000013106
RefSeq Acc Id: ENSCLAP00000012957   ⟸   ENSCLAT00000013107


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008942 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013106 ENTREZGENE
  ENSCLAT00000013106.1 UniProtKB/TrEMBL
  ENSCLAT00000013107 ENTREZGENE
  ENSCLAT00000013107.1 UniProtKB/TrEMBL
InterPro FAM227 UniProtKB/TrEMBL
NCBI Gene Fam227b ENTREZGENE
PANTHER PROTEIN FAM227B UniProtKB/TrEMBL
  PTHR33560 UniProtKB/TrEMBL
Pfam FWWh UniProtKB/TrEMBL
UniProt A0A8C2VDB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VGE7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam227b  family with sequence similarity 227 member B    family with sequence similarity 227, member B  Symbol and/or name change 5135510 APPROVED