Ube2t (ubiquitin conjugating enzyme E2 T) - Rat Genome Database

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Gene: Ube2t (ubiquitin conjugating enzyme E2 T) Chinchilla lanigera
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Symbol: Ube2t
Name: ubiquitin conjugating enzyme E2 T
RGD ID: 8936631
Description: ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin conjugating enzyme activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); Fanconi anemia complementation group T (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-conjugating enzyme E2 T; ubiquitin-conjugating enzyme E2T; ubiquitin-conjugating enzyme E2T (putative)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,391,785 - 38,400,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,391,824 - 38,400,946 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Ube2t
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,391,785 - 38,400,995 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,391,824 - 38,400,946 (-)NCBIChiLan1.0ChiLan1.0
UBE2T
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,331,657 - 202,341,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,331,544 - 202,341,984 (-)EnsemblGRCh38hg38GRCh38
GRCh371202,300,785 - 202,311,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,567,408 - 200,577,707 (-)NCBINCBI36Build 36hg18NCBI36
Celera1175,424,694 - 175,435,001 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,466,879 - 173,477,184 (-)NCBIHuRef
CHM1_11203,723,042 - 203,733,350 (-)NCBICHM1_1
T2T-CHM13v2.01201,593,773 - 201,604,048 (-)NCBIT2T-CHM13v2.0
Ube2t
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,890,303 - 134,901,918 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,890,303 - 134,901,900 (+)EnsemblGRCm39 Ensembl
GRCm381134,962,565 - 134,974,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,962,565 - 134,974,162 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,859,154 - 136,870,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,778,988 - 136,790,548 (+)NCBIMGSCv36mm8
Celera1137,591,338 - 137,603,076 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.24NCBI
Ube2t
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,955,166 - 48,965,668 (+)NCBIGRCr8
mRatBN7.21346,403,352 - 46,413,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,403,375 - 46,414,835 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,009,880 - 49,020,786 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,297,952 - 50,308,858 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,563,684 - 47,574,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,790,877 - 51,801,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,795,867 - 51,801,163 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,842,245 - 56,852,747 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,924,340 - 47,934,842 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,938,382 - 47,948,885 (+)NCBI
Celera1346,729,138 - 46,739,640 (+)NCBICelera
Cytogenetic Map13q13NCBI
UBE2T
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,040,748 - 47,050,477 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,005,393 - 47,015,127 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,929,298 - 177,939,027 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,227,166 - 182,236,809 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,227,166 - 182,236,712 (-)Ensemblpanpan1.1panPan2
UBE2T
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17719,128 - 726,128 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7719,116 - 725,898 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7772,119 - 779,134 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07727,748 - 734,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7730,547 - 745,553 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17716,193 - 723,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07824,570 - 831,592 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07848,415 - 855,450 (+)NCBIUU_Cfam_GSD_1.0
Ube2t
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,978,450 - 72,991,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,222,317 - 2,226,678 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,222,317 - 2,226,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2T
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,454,495 - 24,459,057 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,454,492 - 24,459,085 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,850,303 - 28,854,888 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2T
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,069,971 - 27,084,360 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,070,240 - 27,081,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605527,849,976 - 27,863,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2t
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,425,899 - 8,429,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,420,739 - 8,429,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018383   ⟹   ENSCLAP00000018204
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540638,391,785 - 38,400,995 (-)Ensembl
RefSeq Acc Id: XM_005375210   ⟹   XP_005375267
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540638,391,824 - 38,400,946 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375211   ⟹   XP_005375268
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540638,391,824 - 38,400,836 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375212   ⟹   XP_005375269
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540638,391,824 - 38,400,439 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375267 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375268 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375269 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018204
  ENSCLAP00000018204.1
RefSeq Acc Id: XP_005375267   ⟸   XM_005375210
- UniProtKB: A0A8C2VQQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375268   ⟸   XM_005375211
- UniProtKB: A0A8C2VQQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375269   ⟸   XM_005375212
- UniProtKB: A0A8C2VQQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018204   ⟸   ENSCLAT00000018383
Protein Domains
UBC core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012486 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018383 ENTREZGENE
  ENSCLAT00000018383.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
NCBI Gene Ube2t ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/TrEMBL
PROSITE UBC_1 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
SMART UBCc UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/TrEMBL
UniProt A0A8C2VQQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ube2t  ubiquitin conjugating enzyme E2 T    ubiquitin-conjugating enzyme E2T  Symbol and/or name change 5135510 APPROVED
2015-08-25 Ube2t  ubiquitin-conjugating enzyme E2T    ubiquitin-conjugating enzyme E2T (putative)  Symbol and/or name change 5135510 APPROVED