Lrrtm2 (leucine rich repeat transmembrane neuronal 2) - Rat Genome Database

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Gene: Lrrtm2 (leucine rich repeat transmembrane neuronal 2) Chinchilla lanigera
Analyze
Symbol: Lrrtm2
Name: leucine rich repeat transmembrane neuronal 2
RGD ID: 8936027
Description: ENCODES a protein that exhibits neurexin family protein binding (ortholog); INVOLVED IN long-term synaptic potentiation (ortholog); negative regulation of receptor internalization (ortholog); positive regulation of synapse assembly (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN excitatory synapse (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat transmembrane neuronal protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,636,828 - 1,643,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,636,906 - 1,643,430 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lrrtm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,636,828 - 1,643,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554181,636,906 - 1,643,430 (+)NCBIChiLan1.0ChiLan1.0
LRRTM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,868,921 - 138,875,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,868,921 - 138,875,368 (-)EnsemblGRCh38hg38GRCh38
GRCh375138,204,610 - 138,211,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,232,978 - 138,238,908 (-)NCBINCBI36Build 36hg18NCBI36
Build 345138,232,977 - 138,238,908NCBI
Celera5134,326,860 - 134,332,826 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5133,394,868 - 133,400,836 (-)NCBIHuRef
CHM1_15137,637,719 - 137,643,697 (-)NCBICHM1_1
T2T-CHM13v2.05139,395,050 - 139,401,453 (-)NCBIT2T-CHM13v2.0
Lrrtm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,342,056 - 35,348,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,342,056 - 35,348,077 (-)EnsemblGRCm39 Ensembl
GRCm381835,209,003 - 35,215,024 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,209,003 - 35,215,024 (-)EnsemblGRCm38mm10GRCm38
MGSCv371835,368,657 - 35,374,678 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,336,885 - 35,340,892 (-)NCBIMGSCv36mm8
Celera1835,664,662 - 35,670,684 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.94NCBI
Lrrtm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,091,919 - 27,096,967 (-)NCBIGRCr8
mRatBN7.21826,817,816 - 26,822,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,817,816 - 26,822,864 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,945,217 - 26,950,265 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,708,134 - 27,713,182 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,043,038 - 27,048,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,012,877 - 28,017,925 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,012,877 - 28,017,925 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,722,686 - 27,727,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,722,717 - 27,727,765 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1826,552,974 - 26,558,022 (-)NCBICelera
Cytogenetic Map18p11NCBI
LRRTM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,143,569 - 134,149,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,283,123 - 132,289,371 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,247,933 - 134,254,188 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15140,373,790 - 140,380,127 (-)NCBIpanpan1.1PanPan1.1panPan2
LRRTM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11126,392,642 - 26,397,018 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1126,392,734 - 26,396,223 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1125,159,555 - 25,163,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01127,248,202 - 27,252,518 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1127,248,255 - 27,252,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,955,564 - 25,959,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,775,869 - 25,782,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01126,442,410 - 26,446,727 (-)NCBIUU_Cfam_GSD_1.0
Lrrtm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,637,684 - 153,641,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,967,213 - 7,974,266 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,968,111 - 7,973,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,803,626 - 140,809,493 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,803,624 - 140,810,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,698,365 - 146,704,568 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,534,757 - 41,540,372 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,533,973 - 41,539,915 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,344,313 - 36,349,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrtm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,644,209 - 31,651,688 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,648,543 - 31,651,772 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005382088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01018724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000010186   ⟹   ENSCLAP00000010056
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554181,636,828 - 1,643,588 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000010187   ⟹   ENSCLAP00000010057
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554181,637,878 - 1,639,479 (+)Ensembl
RefSeq Acc Id: XM_005382088   ⟹   XP_005382145
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554181,636,906 - 1,643,430 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382145 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010056
  ENSCLAP00000010056.1
  ENSCLAP00000010057.1
Reference Protein Sequences
RefSeq Acc Id: XP_005382145   ⟸   XM_005382088
- UniProtKB: A0A8C2YMR4 (UniProtKB/TrEMBL),   A0A8C2YMR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010056   ⟸   ENSCLAT00000010186
RefSeq Acc Id: ENSCLAP00000010057   ⟸   ENSCLAT00000010187


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010186 ENTREZGENE
  ENSCLAT00000010186.1 UniProtKB/TrEMBL
  ENSCLAT00000010187.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Lrrtm2 ENTREZGENE
PANTHER LEUCINE RICH REPEAT TRANSMEMBRANE NEURONAL 2 UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PRINTS LEURICHRPT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2YMR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YMR4 ENTREZGENE, UniProtKB/TrEMBL