Ndufb7 (NADH:ubiquinone oxidoreductase subunit B7) - Rat Genome Database

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Gene: Ndufb7 (NADH:ubiquinone oxidoreductase subunit B7) Chinchilla lanigera
Analyze
Symbol: Ndufb7
Name: NADH:ubiquinone oxidoreductase subunit B7
RGD ID: 8935934
Description: ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); ASSOCIATED WITH depressive disorder (ortholog); mitochondrial metabolism disease (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 39 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa; NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541533,134,474 - 33,143,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541533,138,888 - 33,142,663 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ndufb7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541533,134,474 - 33,143,145 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541533,138,888 - 33,142,663 (-)NCBIChiLan1.0ChiLan1.0
NDUFB7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,566,078 - 14,572,066 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,566,078 - 14,572,066 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,676,890 - 14,682,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,537,890 - 14,543,886 (-)NCBINCBI36Build 36hg18NCBI36
Build 341914,537,890 - 14,543,886NCBI
Celera1914,568,834 - 14,574,833 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,246,376 - 14,252,432 (-)NCBIHuRef
CHM1_11914,677,719 - 14,683,723 (-)NCBICHM1_1
T2T-CHM13v2.01914,692,819 - 14,698,809 (-)NCBIT2T-CHM13v2.0
Ndufb7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,293,387 - 84,298,252 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,293,300 - 84,298,255 (+)EnsemblGRCm39 Ensembl
GRCm38883,566,758 - 83,571,623 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,566,671 - 83,571,626 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,090,657 - 86,095,522 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,456,863 - 86,461,728 (+)NCBIMGSCv36mm8
Celera887,856,763 - 87,857,558 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Ndufb7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,472,953 - 41,477,291 (-)NCBIGRCr8
mRatBN7.21924,568,241 - 24,572,579 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,568,241 - 24,572,579 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,389,561 - 31,393,899 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01932,043,973 - 32,048,311 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01934,266,607 - 34,270,946 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01924,701,067 - 24,705,405 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,701,049 - 24,705,405 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,680,097 - 35,684,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,259,362 - 26,263,700 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11926,264,245 - 26,268,461 (-)NCBI
Celera1924,108,863 - 24,113,201 (-)NCBICelera
Cytogenetic Map19q11NCBI
NDUFB7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,495,531 - 19,501,558 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,497,747 - 18,503,747 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,129,123 - 14,135,129 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,972,882 - 14,978,730 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,972,882 - 14,978,730 (-)Ensemblpanpan1.1panPan2
NDUFB7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,090,740 - 48,094,823 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,090,775 - 48,094,819 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2047,967,433 - 47,971,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,607,911 - 48,611,993 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,607,946 - 48,611,985 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12047,821,904 - 47,825,981 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,248,138 - 48,252,205 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,491,112 - 48,495,189 (+)NCBIUU_Cfam_GSD_1.0
Ndufb7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,269,964 - 207,273,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366593,079,365 - 3,084,788 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366593,081,009 - 3,084,737 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFB7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl264,718,906 - 64,723,627 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1264,718,892 - 64,723,631 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,191,266 - 65,191,951 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFB7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,225,005 - 13,230,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,225,006 - 13,230,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660746,424,439 - 6,430,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufb7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,668,618 - 1,672,296 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,668,619 - 1,672,275 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000022407   ⟹   ENSCLAP00000022202
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541533,134,474 - 33,143,145 (-)Ensembl
RefSeq Acc Id: XM_005381108   ⟹   XP_005381165
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541533,138,888 - 33,142,663 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381165 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022202
  ENSCLAP00000022202.1
RefSeq Acc Id: XP_005381165   ⟸   XM_005381108
- UniProtKB: A0A8C2VXP7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022202   ⟸   ENSCLAT00000022407


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015228 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022407 ENTREZGENE
  ENSCLAT00000022407.1 UniProtKB/TrEMBL
InterPro NDUB7 UniProtKB/TrEMBL
NCBI Gene Ndufb7 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 BETA SUBCOMPLEX SUBUNIT 7 UniProtKB/TrEMBL
  PTHR20900 UniProtKB/TrEMBL
Pfam NDUF_B7 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
UniProt A0A8C2VXP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ndufb7  NADH:ubiquinone oxidoreductase subunit B7    NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa  Symbol and/or name change 5135510 APPROVED