Ormdl3 (ORMDL sphingolipid biosynthesis regulator 3) - Rat Genome Database

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Gene: Ormdl3 (ORMDL sphingolipid biosynthesis regulator 3) Chinchilla lanigera
Analyze
Symbol: Ormdl3
Name: ORMDL sphingolipid biosynthesis regulator 3
RGD ID: 8935129
Description: INVOLVED IN ceramide metabolic process (ortholog); motor behavior (ortholog); myelination (ortholog); ASSOCIATED WITH asthma (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy 25 (ortholog); FOUND IN endoplasmic reticulum (ortholog); SPOTS complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ORM1-like 3; ORM1-like protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,621,399 - 14,642,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,621,565 - 14,627,556 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ormdl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545114,621,399 - 14,642,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545114,621,565 - 14,627,556 (-)NCBIChiLan1.0ChiLan1.0
ORMDL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381739,921,041 - 39,927,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1739,921,041 - 39,927,601 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,077,294 - 38,083,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,330,822 - 35,337,380 (-)NCBINCBI36Build 36hg18NCBI36
Build 341735,330,821 - 35,337,380NCBI
Celera1734,737,556 - 34,744,114 (-)NCBICelera
Cytogenetic Map17q21.1NCBI
HuRef1733,871,298 - 33,877,886 (-)NCBIHuRef
CHM1_11738,313,002 - 38,319,590 (-)NCBICHM1_1
T2T-CHM13v2.01740,784,755 - 40,791,324 (-)NCBIT2T-CHM13v2.0
Ormdl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,472,120 - 98,478,071 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,472,082 - 98,478,194 (-)EnsemblGRCm39 Ensembl
GRCm381198,581,294 - 98,587,245 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,581,256 - 98,587,368 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,442,608 - 98,448,559 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,397,384 - 98,403,335 (-)NCBIMGSCv36mm8
Celera11108,235,703 - 108,241,654 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.07NCBI
Ormdl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,086,317 - 84,092,673 (-)NCBIGRCr8
mRatBN7.21083,590,052 - 83,596,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1083,590,071 - 83,598,620 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,535,127 - 88,542,297 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,033,204 - 88,040,374 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,425,892 - 83,433,062 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,545,910 - 86,554,478 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,547,339 - 86,554,478 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,341,986 - 86,350,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,403,919 - 87,411,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1082,339,436 - 82,346,575 (-)NCBICelera
Cytogenetic Map10q31NCBI
ORMDL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21925,027,480 - 25,034,049 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,920,795 - 26,928,871 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01717,361,624 - 17,368,194 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,581,001 - 17,587,741 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,581,612 - 17,587,741 (+)Ensemblpanpan1.1panPan2
ORMDL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,594,425 - 22,601,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,594,480 - 22,599,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,066,387 - 22,073,071 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0923,387,143 - 23,393,828 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl923,387,150 - 23,393,827 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,160,466 - 22,167,152 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0922,419,662 - 22,426,354 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,544,044 - 22,550,746 (+)NCBIUU_Cfam_GSD_1.0
Ormdl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,991,984 - 22,005,704 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,069,387 - 15,076,253 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,069,435 - 15,076,112 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ORMDL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1222,411,587 - 22,417,736 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11222,411,130 - 22,417,744 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,869,406 - 22,876,003 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ORMDL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11666,243,503 - 66,249,800 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1666,243,539 - 66,250,167 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607737,152,785 - 37,159,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ormdl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,209,605 - 3,217,539 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,210,382 - 3,216,130 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000024199   ⟹   ENSCLAP00000023971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545114,621,399 - 14,642,763 (-)Ensembl
RefSeq Acc Id: XM_005394327   ⟹   XP_005394384
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545114,621,565 - 14,627,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394329   ⟹   XP_005394386
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545114,621,565 - 14,627,521 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394384 (Get FASTA)   NCBI Sequence Viewer  
  XP_005394386 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023971
  ENSCLAP00000023971.1
RefSeq Acc Id: XP_005394384   ⟸   XM_005394327
- UniProtKB: A0A8C2YUD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005394386   ⟸   XM_005394329
- UniProtKB: A0A8C2YUD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023971   ⟸   ENSCLAT00000024199


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016451 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024199 ENTREZGENE
  ENSCLAT00000024199.1 UniProtKB/TrEMBL
InterPro ORMDL UniProtKB/TrEMBL
NCBI Gene Ormdl3 ENTREZGENE
PANTHER PTHR12665 UniProtKB/TrEMBL
  PTHR12665:SF11 UniProtKB/TrEMBL
Pfam ORMDL UniProtKB/TrEMBL
PIRSF ORMDL UniProtKB/TrEMBL
UniProt A0A8C2YUD3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ormdl3  ORMDL sphingolipid biosynthesis regulator 3    ORM1-like 3 (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED