Rere (arginine-glutamic acid dipeptide repeats) - Rat Genome Database

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Gene: Rere (arginine-glutamic acid dipeptide repeats) Chinchilla lanigera
Analyze
Symbol: Rere
Name: arginine-glutamic acid dipeptide repeats
RGD ID: 8935000
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN branching morphogenesis of a nerve (ortholog); cerebellar granule cell precursor proliferation (ortholog); cerebellar Purkinje cell layer maturation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arginine-glutamic acid dipeptide (RE) repeats
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554864,443,723 - 4,695,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554864,303,573 - 4,695,800 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Rere
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554864,443,723 - 4,695,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554864,303,573 - 4,695,800 (+)NCBIChiLan1.0ChiLan1.0
RERE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3818,352,404 - 8,817,640 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl18,352,397 - 8,848,921 (-)EnsemblGRCh38hg38GRCh38
GRCh3718,412,464 - 8,877,699 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3618,335,051 - 8,800,286 (-)NCBINCBI36hg18NCBI36
Build 3418,346,722 - 8,811,790NCBI
Celera17,520,570 - 7,986,441 (-)NCBI
Cytogenetic Map1p36.23NCBI
HuRef17,561,179 - 8,026,761 (-)NCBIHuRef
CHM1_118,401,786 - 8,867,545 (-)NCBICHM1_1
T2T-CHM13v2.017,885,246 - 8,351,098 (-)NCBI
Rere
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394150,365,372 - 150,706,423 (+)NCBIGRCm39mm39
GRCm39 Ensembl4150,366,103 - 150,706,423 (+)Ensembl
GRCm384150,281,511 - 150,621,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4150,281,646 - 150,621,966 (+)EnsemblGRCm38mm10GRCm38
MGSCv374149,656,025 - 149,996,075 (+)NCBIGRCm37mm9NCBIm37
MGSCv364149,250,140 - 149,465,771 (+)NCBImm8
Celera4152,556,963 - 152,899,017 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map481.34NCBI
Rere
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25160,765,855 - 161,097,678 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl5160,765,934 - 161,097,677 (+)Ensembl
Rnor_6.05167,330,966 - 167,664,506 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5167,331,035 - 167,664,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,960,573 - 171,292,513 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45167,440,122 - 167,777,271 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15167,450,315 - 167,785,644 (+)NCBI
Celera5159,022,463 - 159,353,516 (+)NCBICelera
Cytogenetic Map5q36NCBI
RERE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.118,348,687 - 8,747,495 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl18,351,367 - 8,648,973 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v017,111,594 - 7,576,667 (-)NCBIMhudiblu_PPA_v0panPan3
RERE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1561,868,288 - 62,249,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl561,868,685 - 62,215,973 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha561,877,331 - 62,286,365 (-)NCBI
ROS_Cfam_1.0562,085,105 - 62,495,227 (-)NCBI
ROS_Cfam_1.0 Ensembl562,087,296 - 62,495,288 (-)Ensembl
UMICH_Zoey_3.1562,084,029 - 62,493,986 (-)NCBI
UNSW_CanFamBas_1.0561,948,407 - 62,357,291 (-)NCBI
UU_Cfam_GSD_1.0562,352,661 - 62,762,441 (-)NCBI
Rere
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505832,193,393 - 32,496,551 (-)NCBI
SpeTri2.0NW_0049366232,678,627 - 2,942,387 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RERE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1668,954,766 - 69,258,855 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2663,443,116 - 63,522,403 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RERE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120122,946,759 - 123,408,428 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20123,109,364 - 123,408,631 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605426,963,344 - 27,436,567 (+)NCBIVero_WHO_p1.0
Rere
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248183,388,149 - 3,648,634 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248183,255,835 - 3,648,634 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008584   ⟹   ENSCLAP00000008457
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554864,443,723 - 4,695,800 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000008585   ⟹   ENSCLAP00000008458
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554864,560,051 - 4,693,271 (+)Ensembl
RefSeq Acc Id: XM_013504212   ⟹   XP_013359666
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554864,303,573 - 4,695,800 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359666 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013359666   ⟸   XM_013504212
- Sequence:
RefSeq Acc Id: ENSCLAP00000008457   ⟸   ENSCLAT00000008584
RefSeq Acc Id: ENSCLAP00000008458   ⟸   ENSCLAT00000008585
Protein Domains
BAH   ELM2   SANT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000008457 ENTREZGENE
  ENSCLAP00000008457.1 UniProtKB/TrEMBL
  ENSCLAP00000008458.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008584 ENTREZGENE
  ENSCLAT00000008584.1 UniProtKB/TrEMBL
  ENSCLAT00000008585.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
InterPro Atrophin-like UniProtKB/TrEMBL
  BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
NCBI Gene Rere ENTREZGENE
Pfam Atrophin-1 UniProtKB/TrEMBL
  BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  GATA UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2V0G8_CHILA UniProtKB/TrEMBL
  A0A8C2V0H2_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Rere  arginine-glutamic acid dipeptide repeats    arginine-glutamic acid dipeptide (RE) repeats  Symbol and/or name change 5135510 APPROVED