Serinc5 (serine incorporator 5) - Rat Genome Database

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Gene: Serinc5 (serine incorporator 5) Chinchilla lanigera
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Symbol: Serinc5
Name: serine incorporator 5
RGD ID: 8933989
Description: INVOLVED IN defense response to virus (ortholog); detection of virus (ortholog); innate immune response (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Serinc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBIChiLan1.0ChiLan1.0
SERINC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38580,111,225 - 80,256,048 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl580,111,651 - 80,256,048 (-)EnsemblGRCh38hg38GRCh38
GRCh37579,407,048 - 79,551,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36579,443,230 - 79,587,626 (-)NCBINCBI36hg18NCBI36
Celera575,308,393 - 75,453,225 (-)NCBI
Cytogenetic Map5q14.1NCBI
HuRef574,614,526 - 74,759,739 (-)NCBIHuRef
CHM1_1578,840,061 - 78,985,426 (-)NCBICHM1_1
T2T-CHM13v2.0580,595,078 - 80,740,399 (-)NCBI
Serinc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391392,747,646 - 92,848,455 (+)NCBIGRCm39mm39
GRCm39 Ensembl1392,747,599 - 92,848,455 (+)Ensembl
GRCm381392,611,138 - 92,711,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1392,611,091 - 92,711,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv371393,381,093 - 93,481,902 (+)NCBIGRCm37mm9NCBIm37
MGSCv361393,711,891 - 93,812,700 (+)NCBImm8
Celera1396,219,502 - 96,315,704 (+)NCBICelera
Cytogenetic Map13C3NCBI
Serinc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2223,846,899 - 23,950,346 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl223,846,900 - 23,950,346 (+)Ensembl
Rnor_6.0222,195,507 - 22,310,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,195,600 - 22,310,312 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0241,398,814 - 41,516,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4222,871,987 - 22,977,705 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1222,792,355 - 22,898,074 (+)NCBI
Celera219,936,153 - 20,037,869 (+)NCBICelera
Cytogenetic Map2q12NCBI
SERINC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1535,332,193 - 35,449,905 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl535,332,187 - 35,475,016 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0535,059,291 - 35,204,987 (+)NCBIMhudiblu_PPA_v0panPan3
SERINC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,788,368 - 26,894,811 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,733,673 - 26,891,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,029,028 - 28,135,470 (+)NCBI
ROS_Cfam_1.0326,707,775 - 26,814,701 (+)NCBI
ROS_Cfam_1.0 Ensembl326,707,833 - 26,814,701 (+)Ensembl
UMICH_Zoey_3.1326,647,886 - 26,754,545 (+)NCBI
UNSW_CanFamBas_1.0326,620,080 - 26,731,366 (+)NCBI
UU_Cfam_GSD_1.0326,902,941 - 27,005,575 (+)NCBI
Serinc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213182,879,210 - 182,981,654 (+)NCBI
SpeTri2.0NW_0049365497,873,709 - 7,979,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERINC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,843,003 - 89,046,029 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1288,843,003 - 88,992,077 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2290,636,261 - 90,694,041 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERINC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1474,330,410 - 74,449,069 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl474,335,401 - 74,449,035 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604923,177,767 - 23,297,414 (-)NCBIVero_WHO_p1.0
Serinc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247431,242,835 - 1,308,842 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247431,239,698 - 1,308,735 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008050   ⟹   ENSCLAP00000007930
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)Ensembl
RefSeq Acc Id: XM_013513014   ⟹   XP_013368468
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368468 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013368468   ⟸   XM_013513014
- Sequence:
RefSeq Acc Id: ENSCLAP00000007930   ⟸   ENSCLAT00000008050


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005561 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000007930 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008050 UniProtKB/TrEMBL
NCBI Gene LOC102006460 ENTREZGENE
UniProt A0A8C2UZS1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Serinc5  serine incorporator 5  LOC102006460  uncharacterized LOC102006460  Symbol and/or name change 5135510 APPROVED