Serinc5 (serine incorporator 5) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Serinc5 (serine incorporator 5) Chinchilla lanigera
Analyze
Symbol: Serinc5
Name: serine incorporator 5
RGD ID: 8933989
Description: INVOLVED IN defense response to virus (ortholog); detection of virus (ortholog); innate immune response (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Serinc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBIChiLan1.0ChiLan1.0
SERINC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38580,111,225 - 80,256,048 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl580,111,651 - 80,256,048 (-)EnsemblGRCh38hg38GRCh38
GRCh37579,407,048 - 79,551,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36579,443,230 - 79,587,626 (-)NCBINCBI36hg18NCBI36
Celera575,308,393 - 75,453,225 (-)NCBI
Cytogenetic Map5q14.1NCBI
HuRef574,614,526 - 74,759,739 (-)NCBIHuRef
CHM1_1578,840,061 - 78,985,426 (-)NCBICHM1_1
T2T-CHM13v2.0580,595,078 - 80,740,399 (-)NCBI
Serinc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391392,747,646 - 92,848,455 (+)NCBIGRCm39mm39
GRCm39 Ensembl1392,747,599 - 92,848,455 (+)Ensembl
GRCm381392,611,138 - 92,711,947 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1392,611,091 - 92,711,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv371393,381,093 - 93,481,902 (+)NCBIGRCm37mm9NCBIm37
MGSCv361393,711,891 - 93,812,700 (+)NCBImm8
Celera1396,219,502 - 96,315,704 (+)NCBICelera
Cytogenetic Map13C3NCBI
Serinc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2223,846,899 - 23,950,346 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl223,846,900 - 23,950,346 (+)Ensembl
Rnor_6.0222,195,507 - 22,310,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl222,195,600 - 22,310,312 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0241,398,814 - 41,516,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4222,871,987 - 22,977,705 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1222,792,355 - 22,898,074 (+)NCBI
Celera219,936,153 - 20,037,869 (+)NCBICelera
Cytogenetic Map2q12NCBI
SERINC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1535,332,193 - 35,449,905 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl535,332,187 - 35,475,016 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0535,059,291 - 35,204,987 (+)NCBIMhudiblu_PPA_v0panPan3
SERINC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1326,788,368 - 26,894,811 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl326,733,673 - 26,891,255 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha328,029,028 - 28,135,470 (+)NCBI
ROS_Cfam_1.0326,707,775 - 26,814,701 (+)NCBI
ROS_Cfam_1.0 Ensembl326,707,833 - 26,814,701 (+)Ensembl
UMICH_Zoey_3.1326,647,886 - 26,754,545 (+)NCBI
UNSW_CanFamBas_1.0326,620,080 - 26,731,366 (+)NCBI
UU_Cfam_GSD_1.0326,902,941 - 27,005,575 (+)NCBI
Serinc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213182,879,210 - 182,981,654 (+)NCBI
SpeTri2.0NW_0049365497,873,709 - 7,979,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERINC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl288,843,003 - 89,046,029 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1288,843,003 - 88,992,077 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2290,636,261 - 90,694,041 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERINC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1474,330,410 - 74,449,069 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl474,335,401 - 74,449,035 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604923,177,767 - 23,297,414 (-)NCBIVero_WHO_p1.0
Serinc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247431,242,835 - 1,308,842 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247431,239,698 - 1,308,735 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008050   ⟹   ENSCLAP00000007930
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541829,527,307 - 29,565,159 (+)Ensembl
RefSeq Acc Id: XM_013513014   ⟹   XP_013368468
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541829,502,562 - 29,573,966 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368468 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013368468   ⟸   XM_013513014
- Sequence:
RefSeq Acc Id: ENSCLAP00000007930   ⟸   ENSCLAT00000008050


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005561 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000007930 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008050 UniProtKB/TrEMBL
NCBI Gene LOC102006460 ENTREZGENE
UniProt A0A8C2UZS1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Serinc5  serine incorporator 5  LOC102006460  uncharacterized LOC102006460  Symbol and/or name change 5135510 APPROVED