Slc39a10 (solute carrier family 39 member 10) - Rat Genome Database

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Gene: Slc39a10 (solute carrier family 39 member 10) Chinchilla lanigera
Analyze
Symbol: Slc39a10
Name: solute carrier family 39 member 10
RGD ID: 8933714
Description: ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); negative regulation of B cell apoptotic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neoplasm Invasiveness (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 39 (zinc transporter), member 10; zinc transporter ZIP10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554034,426,538 - 4,479,693 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc39a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554034,426,538 - 4,479,693 (-)NCBIChiLan1.0ChiLan1.0
SLC39A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382195,613,029 - 195,737,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2195,575,977 - 195,737,702 (+)EnsemblGRCh38hg38GRCh38
GRCh372196,521,682 - 196,602,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362196,230,184 - 196,310,663 (+)NCBINCBI36Build 36hg18NCBI36
Celera2190,277,406 - 190,358,291 (+)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2188,374,467 - 188,455,230 (+)NCBIHuRef
CHM1_12196,527,823 - 196,608,722 (+)NCBICHM1_1
T2T-CHM13v2.02196,097,362 - 196,222,040 (+)NCBIT2T-CHM13v2.0
Slc39a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,846,704 - 46,964,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,846,704 - 46,932,012 (-)EnsemblGRCm39 Ensembl
GRCm38146,807,544 - 46,925,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl146,807,544 - 46,892,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv37146,864,389 - 46,910,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,752,090 - 46,798,055 (-)NCBIMGSCv36mm8
Celera147,145,316 - 47,190,906 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map124.07NCBI
Slc39a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8962,331,281 - 62,454,754 (+)NCBIGRCr8
mRatBN7.2954,836,841 - 54,960,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl954,876,141 - 54,960,325 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx963,415,252 - 63,464,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0968,531,028 - 68,580,251 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0966,826,876 - 66,876,105 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0959,947,562 - 60,070,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,021,534 - 60,070,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,634,923 - 59,758,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,168,107 - 52,217,677 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1952,169,481 - 52,216,722 (+)NCBI
Celera952,413,746 - 52,463,043 (+)NCBICelera
Cytogenetic Map9q31NCBI
SLC39A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21398,199,554 - 98,357,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B98,214,541 - 98,372,965 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B82,823,472 - 82,981,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B200,736,327 - 200,883,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B200,805,459 - 200,883,524 (+)Ensemblpanpan1.1panPan2
SLC39A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1375,482,200 - 5,521,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl375,482,177 - 5,521,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha376,325,793 - 6,462,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,271,185 - 5,408,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl375,270,867 - 5,408,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1375,272,054 - 5,408,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0375,244,321 - 5,380,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,260,580 - 5,397,312 (+)NCBIUU_Cfam_GSD_1.0
Slc39a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303153,412,914 - 153,539,813 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365063,298,245 - 3,396,291 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365063,298,259 - 3,425,126 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1599,584,872 - 99,724,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11599,584,830 - 99,724,621 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC39A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11081,143,658 - 81,273,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1081,187,587 - 81,273,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040118,172,530 - 118,298,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248541,163,025 - 1,280,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005373283   ⟹   XP_005373340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554034,426,538 - 4,479,693 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005373284   ⟹   XP_005373341
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554034,426,538 - 4,478,819 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373340 (Get FASTA)   NCBI Sequence Viewer  
  XP_005373341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015635
  ENSCLAP00000015635.1
Reference Protein Sequences
RefSeq Acc Id: XP_005373340   ⟸   XM_005373283
- UniProtKB: A0A8C2VHD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005373341   ⟸   XM_005373284
- UniProtKB: A0A8C2VHD5 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010745 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015797 ENTREZGENE
  ENSCLAT00000015797.1 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
NCBI Gene Slc39a10 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP10 UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt A0A8C2VHD5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc39a10  solute carrier family 39 member 10    solute carrier family 39 (zinc transporter), member 10  Symbol and/or name change 5135510 APPROVED