Hoxa13 (homeobox A13) - Rat Genome Database

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Gene: Hoxa13 (homeobox A13) Chinchilla lanigera
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Symbol: Hoxa13
Name: homeobox A13
RGD ID: 8933396
Description: ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); animal organ morphogenesis (ortholog); artery morphogenesis (ortholog); ASSOCIATED WITH Anorectal Malformations (ortholog); Congenital Hand Deformities (ortholog); Female Urogenital Diseases (ortholog); FOUND IN chromosome (ortholog); intermediate filament cytoskeleton (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein Hox-A13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,890,171 - 28,893,515 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,887,952 - 28,893,515 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Hoxa13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,890,171 - 28,893,515 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,887,952 - 28,893,515 (-)NCBIChiLan1.0ChiLan1.0
HOXA13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl727,193,503 - 27,200,091 (-)EnsemblGRCh38hg38GRCh38
GRCh38727,194,364 - 27,200,091 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37727,233,983 - 27,239,710 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,203,024 - 27,206,250 (-)NCBINCBI36hg18NCBI36
Build 34727,009,738 - 27,012,936NCBI
Celera727,225,437 - 27,228,662 (-)NCBI
Cytogenetic Map7p15.2NCBI
HuRef727,117,064 - 27,119,882 (-)NCBIHuRef
CHM1_1727,236,223 - 27,239,448 (-)NCBICHM1_1
CRA_TCAGchr7v2727,287,684 - 27,290,909 (-)NCBI
Hoxa13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,235,833 - 52,237,865 (-)NCBIGRCm39mm39
GRCm39 Ensembl652,234,674 - 52,237,788 (-)Ensembl
GRCm38652,258,853 - 52,260,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,257,694 - 52,260,880 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,208,852 - 52,210,874 (-)NCBIGRCm37mm9NCBIm37
MGSCv36652,188,436 - 52,190,458 (-)NCBImm8
Celera652,780,486 - 52,782,142 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.41NCBI
Hoxa13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2481,358,956 - 81,361,091 (-)NCBI
Rnor_6.0 Ensembl482,228,017 - 82,229,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0482,313,383 - 82,315,550 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04146,980,144 - 146,982,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,558,841 - 80,561,053NCBIRGSC3.4rn4RGSC3.4
Celera476,249,534 - 76,251,232 (-)NCBICelera
Cytogenetic Map4q24NCBI
HOXA13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1727,441,171 - 27,443,793 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0727,838,656 - 27,844,562 (-)NCBIMhudiblu_PPA_v0panPan3
HOXA13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,371,234 - 40,375,261 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,373,059 - 40,375,980 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,801,720 - 39,806,138 (-)NCBI
ROS_Cfam_1.01440,309,583 - 40,314,003 (-)NCBI
UMICH_Zoey_3.11440,423,492 - 40,427,909 (-)NCBI
UNSW_CanFamBas_1.01440,108,556 - 40,112,977 (-)NCBI
UU_Cfam_GSD_1.01440,467,202 - 40,471,624 (-)NCBI
Hoxa13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,612,984 - 84,615,546 (-)NCBI
SpeTri2.0NW_0049364783,824,715 - 3,827,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,373,440 - 45,380,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,373,340 - 45,379,046 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,007,054 - 50,008,334 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,168,239 - 31,175,960 (+)NCBI
ChlSab1.1 Ensembl2131,168,793 - 31,173,056 (+)Ensembl
Vero_WHO_p1.0NW_02366604273,559,316 - 73,565,124 (-)NCBI
Hoxa13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247393,405,860 - 3,410,426 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015192   ⟹   ENSCLAP00000015033
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541028,890,171 - 28,893,515 (-)Ensembl
RefSeq Acc Id: XM_013510484   ⟹   XP_013365938
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541028,890,171 - 28,893,515 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001232705
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541028,887,952 - 28,893,515 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365938 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013365938   ⟸   XM_013510484
- Sequence:
RefSeq Acc Id: ENSCLAP00000015033   ⟸   ENSCLAT00000015192


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010361 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000015033 ENTREZGENE
Ensembl Transcript ENSCLAT00000015192 ENTREZGENE
NCBI Gene Hoxa13 ENTREZGENE