Bpifc (BPI fold containing family C)

Gene: Bpifc (BPI fold containing family C) Chinchilla lanigera

Analyze

Symbol:

Bpifc

Name:

BPI fold containing family C

RGD ID:

8933022

Description:

ASSOCIATED WITH genetic disease (ortholog); Glucose-Galactose Malabsorption (ortholog); muscular dystrophy-dystroglycanopathy type B6 (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	41,376,471 - 41,403,418 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	41,376,471 - 41,403,410 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Glucose-Galactose Malabsorption (ISO)

muscular dystrophy-dystroglycanopathy type B6 (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Bpifc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	41,376,471 - 41,403,418 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	41,376,471 - 41,403,410 (-)	NCBI	ChiLan1.0	ChiLan1.0

BPIFC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	32,413,845 - 32,464,446 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	32,413,845 - 32,464,484 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	32,809,832 - 32,860,433 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	31,140,290 - 31,183,373 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	31,134,843 - 31,177,927	NCBI
Celera	22	16,612,005 - 16,655,541 (-)	NCBI		Celera
Cytogenetic Map	22	q12.3	NCBI
HuRef	22	15,767,165 - 15,810,605 (-)	NCBI		HuRef
CHM1_1	22	32,769,192 - 32,812,725 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	32,877,760 - 32,928,344 (-)	NCBI		T2T-CHM13v2.0

Bpifc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	85,795,555 - 85,847,724 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	85,795,204 - 85,847,759 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	85,959,691 - 86,011,860 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	85,959,340 - 86,011,895 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	85,422,436 - 85,474,605 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	85,389,502 - 85,441,649 (-)	NCBI		MGSCv36	mm8
Celera	10	87,934,285 - 87,985,632 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.83	NCBI

Bpifc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	19,736,282 - 19,793,737 (+)	NCBI		GRCr8
mRatBN7.2	7	17,848,787 - 17,905,993 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	17,861,007 - 17,905,919 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	19,810,882 - 19,867,928 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	21,968,077 - 22,025,265 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	21,750,534 - 21,807,572 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	23,854,846 - 23,911,953 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	23,854,846 - 23,911,953 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	24,004,361 - 24,061,477 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	19,987,071 - 20,044,349 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	20,012,194 - 20,056,636 (+)	NCBI
Celera	7	15,082,080 - 15,138,443 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

BPIFC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	42,350,613 - 42,411,462 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	45,051,008 - 45,111,749 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	13,420,450 - 13,481,074 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	31,274,592 - 31,324,927 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	31,275,046 - 31,317,832 (-)	Ensembl	panpan1.1		panPan2

BPIFC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	30,948,913 - 31,009,364 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	30,965,535 - 31,009,044 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	30,931,912 - 30,992,322 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	31,791,060 - 31,851,975 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	31,794,263 - 31,851,661 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	31,530,910 - 31,591,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	31,820,197 - 31,880,641 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	32,006,946 - 32,067,135 (+)	NCBI		UU_Cfam_GSD_1.0

Bpifc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	14,284,038 - 14,322,295 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	7,299,085 - 7,332,518 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	7,299,085 - 7,332,518 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BPIFC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	12,542,266 - 12,578,954 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	12,526,928 - 12,578,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	12,313,081 - 12,364,500 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BPIFC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	15,244,809 - 15,287,890 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	15,245,243 - 15,283,430 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	110,716,155 - 110,762,391 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bpifc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	2,012,784 - 2,043,932 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	1,997,493 - 2,043,910 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013519152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01005549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCC01004323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01161130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000012409 ⟹ ENSCLAP00000012267

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955405	41,376,471 - 41,403,418 (-)	Ensembl

RefSeq Acc Id:

XM_013519152 ⟹ XP_013374606

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955405	41,376,471 - 41,403,410 (-)	NCBI

Sequence:

show sequence

GAAGATCGATTATGTGAACTACAACTTTTCAAACATCAAAATCAATGCCTTTTCATTGCCAAAT
ACTTCACTAGCCTTCGTGCCCGGGGTGGGCATCAGAGCACTGACCAACCACGGCACCACCAACG
TCAGCTTGGACTGGGAAGTCAGGGCTCCGCTTTTCCATGATGCAGGGGGAGCCGACCTCTTCCT
CTCCGGAGTCTACTTCACGGGCGTCCTCCTCCCAACCCAGAACGTCTTCGGCCATCCGGCTCTG
CGGCTCCAGGACTGCTCCGCCCAAGTGAGCCACGCCCACGTCTCCTTCTCGGGGGAGCTGAGTG
CGCTGTACAACACCTTCGCCGAGCCCATGGAGAAGCCCATTTTAAAGAACTTAAACACGATGCT
CTGTCCCATCATCACGGACGAGGTAGAAGCGCTGAATGTCAACCTCAGCTCCCTGGACGTGTTA
ACCAAGATTGACAACTTTACACTGCTGGATTACTCCCTAGTCGGTCCTCCAGAGATTACTGAGC
ACTACCTCGACCTGAATTTGAAGGGTGTGTTTTACCCGCTGGACAACCTCGCCGACCCCCCCTT
CTCTCCAGAGCCCTTCGAGCTGCCGGAGCGCCTGGACTCCATGGTGTACATTGGCATCTCTGAG
TACTTCTTCCAGTCGGCGTCCTTTGCGCACTTCGCCGCCGGTGCTTTCAGCATTACGCTGTCCA
CCAAGGAGATTTCCAACCACTTCATCCAGAACTCCCAAGGAATTGGCATCGTGCTCTCCCGGCT
TGCAGATCTCTACATCCTGTCGCAGCCCCTCATGCTGCGGATCATGGCCACGGAGCCGCCAGTC
GTCCGCCTGCAGCCGGGCAACTTCACGCTGGACATCCCCGCCTCTGTCATCGTGCTCACGCAGT
TCAAGAACAGCACGGAAGTGGAGCCCATCGTCTCCATGGACTTCGTTGCCAGTACCAGCGTGGG
CCTGGCGATCCTGGGACAAAGGCTGGTCTGCTCCCTGTCTCTGAACAGGTTCCGTCTGTCTGGG
TCAGAGGCCAACCGCAGCGACATTAAGGTCTTGAGGTTCGAGAATATCCTGTCCTCCATTCTGC
ACTTCGGAGTCCTCCCCCTGGCCAACACAAAATTGCAGCAAGGATTTCCCCTGCCCAGGCCATA
TAATGTCTCATTGGTCAACTCAGACATTGAAGTTCTTGAGGGGTTCATTTTGATTTCCACCAAC
CTGAAATATGAAATGTCCTCGAAACAGCAGCCAAGTTTCCATGGCTGGGGAGATCTGAACCGGA
TAAGGAGACAGGGGACCAGGCAGCCAGCCCCTTGATGCCAATTCACATCCTCCCCAGGAAGTAC
CTGGCCCTAATCCCACAGCGCCTGTCCATGGGGAGGGGAGGACAGCAACAGTGGGACTGGAAAG
CCCTTCTGCATCGCACAGACAGAAAATTTGCTCTCTGGAGCCTCCAGGAACCTGGAGCGAGGCC
ACCTGGGCTAAAGGCTGAACAGGGGTCTGTGTGCTGTGTACGGAGGGATACGCCTTGCAGTGTG
AGTGTGTAGAAGCTGTGTGCCTGTGTTTATAAGATTCTGGGGACAAGAGTCTGGCATGTGATTC
TGACCAGGTGGGTGAAAACTCTTAAGTCTGTATTTATATCAGCTCCCTTCTTTAGAGTTTTTTC
TCTACCTGCGTGCTGGATTTTACATTTTATGTTCACTGTCACTGTCCCCTATGTCTGATTAAAA
TCATTTTCTACCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013374606	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000012267
	ENSCLAP00000012267.1

RefSeq Acc Id:

XP_013374606 ⟸ XM_013519152

- UniProtKB:

A0A8C2VGB8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

KIDYVNYNFSNIKINAFSLPNTSLAFVPGVGIRALTNHGTTNVSLDWEVRAPLFHDAGGADLFL
SGVYFTGVLLPTQNVFGHPALRLQDCSAQVSHAHVSFSGELSALYNTFAEPMEKPILKNLNTML
CPIITDEVEALNVNLSSLDVLTKIDNFTLLDYSLVGPPEITEHYLDLNLKGVFYPLDNLADPPF
SPEPFELPERLDSMVYIGISEYFFQSASFAHFAAGAFSITLSTKEISNHFIQNSQGIGIVLSRL
ADLYILSQPLMLRIMATEPPVVRLQPGNFTLDIPASVIVLTQFKNSTEVEPIVSMDFVASTSVG
LAILGQRLVCSLSLNRFRLSGSEANRSDIKVLRFENILSSILHFGVLPLANTKLQQGFPLPRPY
NVSLVNSDIEVLEGFILISTNLKYEMSSKQQPSFHGWGDLNRIRRQGTRQPAP

hide sequence

RefSeq Acc Id:

ENSCLAP00000012267 ⟸ ENSCLAT00000012409

Protein Domains

Lipid-binding serum glycoprotein C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008466	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000012409	ENTREZGENE
	ENSCLAT00000012409.1	UniProtKB/TrEMBL
InterPro	Bactericidal_perm-incr_a/b_dom	UniProtKB/TrEMBL
	BPI/LBP/Plunc	UniProtKB/TrEMBL
	Lipid-bd_serum_glycop_C	UniProtKB/TrEMBL
	Lipid-bd_serum_glycop_N	UniProtKB/TrEMBL
NCBI Gene	Bpifc	ENTREZGENE
PANTHER	PTHR10504	UniProtKB/TrEMBL
	PTHR10504:SF17	UniProtKB/TrEMBL
Pfam	LBP_BPI_CETP	UniProtKB/TrEMBL
	LBP_BPI_CETP_C	UniProtKB/TrEMBL
SMART	BPI2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55394	UniProtKB/TrEMBL
UniProt	A0A8C2VGB8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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