Tgif2 (TGFB induced factor homeobox 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tgif2 (TGFB induced factor homeobox 2) Chinchilla lanigera
Analyze
Symbol: Tgif2
Name: TGFB induced factor homeobox 2
RGD ID: 8932083
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); nodal signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); ASSOCIATED WITH visual epilepsy (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: homeobox protein TGIF2; TGFB-induced factor homeobox 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,024,359 - 25,041,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,024,359 - 25,042,568 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (ISO)
nucleoplasm  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Tgif2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,024,359 - 25,041,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,024,359 - 25,042,568 (-)NCBIChiLan1.0ChiLan1.0
TGIF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2036,573,488 - 36,593,950 (+)EnsemblGRCh38hg38GRCh38
GRCh382036,573,464 - 36,593,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372035,201,867 - 35,222,353 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,635,424 - 34,655,767 (+)NCBINCBI36hg18NCBI36
Build 342034,635,436 - 34,655,764NCBI
Celera2031,909,069 - 31,929,392 (+)NCBI
Cytogenetic Map20q11.23NCBI
HuRef2031,911,365 - 31,958,409 (+)NCBIHuRef
CHM1_12035,103,593 - 35,124,063 (+)NCBICHM1_1
Tgif2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,681,737 - 156,697,490 (+)NCBIGRCm39mm39
GRCm39 Ensembl2156,681,927 - 156,697,490 (+)Ensembl
GRCm382156,839,817 - 156,855,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,840,007 - 156,855,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv372156,665,813 - 156,681,268 (+)NCBIGRCm37mm9NCBIm37
MGSCv362156,531,518 - 156,546,973 (+)NCBImm8
Celera2162,776,165 - 162,791,616 (+)NCBICelera
Cytogenetic Map2H1NCBI
Tgif2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23145,333,152 - 145,348,599 (+)NCBI
Rnor_6.0 Ensembl3152,909,189 - 152,924,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03152,906,961 - 152,924,380 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03158,772,764 - 158,788,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,239,123 - 147,254,254 (+)NCBIRGSC3.4rn4RGSC3.4
Celera3144,050,368 - 144,065,544 (+)NCBICelera
Cytogenetic Map3q42NCBI
TGIF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12034,025,859 - 34,046,354 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,028,415 - 34,046,354 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02032,906,641 - 32,927,119 (+)NCBIMhudiblu_PPA_v0panPan3
TGIF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12425,360,363 - 25,375,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2425,364,357 - 25,373,302 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,996,994 - 25,021,418 (+)NCBI
ROS_Cfam_1.02426,044,664 - 26,069,117 (+)NCBI
UMICH_Zoey_3.12425,327,378 - 25,351,679 (+)NCBI
UNSW_CanFamBas_1.02425,422,053 - 25,446,452 (+)NCBI
UU_Cfam_GSD_1.02425,913,184 - 25,937,488 (+)NCBI
Tgif2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640174,284,161 - 174,299,452 (+)NCBI
SpeTri2.0NW_0049365614,450,093 - 4,465,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGIF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,675,084 - 39,858,159 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,840,649 - 39,858,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TGIF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1257,437,535 - 57,461,975 (+)NCBI
ChlSab1.1 Ensembl257,437,623 - 57,462,000 (+)Ensembl
Vero_WHO_p1.0NW_0236660873,929,847 - 3,952,577 (+)NCBI
Tgif2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248422,909,016 - 2,926,555 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025328   ⟹   ENSCLAP00000025083
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542225,024,359 - 25,041,459 (-)Ensembl
RefSeq Acc Id: XM_005384746   ⟹   XP_005384803
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,042,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384747   ⟹   XP_005384804
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,041,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384748   ⟹   XP_005384805
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,042,162 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384749   ⟹   XP_005384806
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,042,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384750   ⟹   XP_005384807
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,041,927 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384751   ⟹   XP_005384808
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542225,024,359 - 25,041,459 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005384806   ⟸   XM_005384749
- Sequence:
RefSeq Acc Id: XP_005384803   ⟸   XM_005384746
- Sequence:
RefSeq Acc Id: XP_005384805   ⟸   XM_005384748
- Sequence:
RefSeq Acc Id: XP_005384804   ⟸   XM_005384747
- Sequence:
RefSeq Acc Id: XP_005384807   ⟸   XM_005384750
- Sequence:
RefSeq Acc Id: XP_005384808   ⟸   XM_005384751
- Sequence:
RefSeq Acc Id: ENSCLAP00000025083   ⟸   ENSCLAT00000025328


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017225 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000025083 ENTREZGENE
Ensembl Transcript ENSCLAT00000025328 ENTREZGENE
NCBI Gene Tgif2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tgif2  TGFB induced factor homeobox 2    TGFB-induced factor homeobox 2  Symbol and/or name change 5135510 APPROVED