Fam193b (family with sequence similarity 193 member B) - Rat Genome Database

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Gene: Fam193b (family with sequence similarity 193 member B) Chinchilla lanigera
Analyze
Symbol: Fam193b
Name: family with sequence similarity 193 member B
RGD ID: 8930983
Description: ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 193, member B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,758,629 - 29,774,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nuclear speck  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam193b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,758,629 - 29,774,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBIChiLan1.0ChiLan1.0
FAM193B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,519,788 - 177,554,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,519,789 - 177,554,586 (-)EnsemblGRCh38hg38GRCh38
GRCh375176,946,789 - 176,981,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,879,396 - 176,914,144 (-)NCBINCBI36Build 36hg18NCBI36
Celera5171,520,903 - 171,555,672 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,866,585 - 171,901,166 (-)NCBIHuRef
CHM1_15176,379,285 - 176,413,866 (-)NCBICHM1_1
T2T-CHM13v2.05178,062,047 - 178,096,824 (-)NCBIT2T-CHM13v2.0
Fam193b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,687,129 - 55,718,920 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,687,129 - 55,718,933 (-)EnsemblGRCm39 Ensembl
GRCm381355,539,316 - 55,571,120 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,539,316 - 55,571,120 (-)EnsemblGRCm38mm10GRCm38
MGSCv371355,640,677 - 55,672,481 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,548,941 - 55,559,631 (-)NCBIMGSCv36mm8
Celera1356,593,438 - 56,625,240 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Fam193b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,071,974 - 9,104,659 (+)NCBIGRCr8
mRatBN7.2179,066,818 - 9,099,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,084,349 - 9,115,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,614,369 - 10,645,593 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,080,738 - 9,112,166 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,595,742 - 9,628,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,595,761 - 9,628,413 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,704,516 - 11,737,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,112,073 - 15,143,497 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,146,729 - 9,178,104 (+)NCBICelera
Cytogenetic Map17p14NCBI
FAM193B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,602,864 - 172,637,492 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,742,405 - 170,777,717 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,820,255 - 172,855,574 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,881,778 - 179,915,942 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,884,021 - 179,915,964 (-)Ensemblpanpan1.1panPan2
FAM193B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1435,818,805 - 35,852,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl435,818,087 - 35,852,053 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha435,786,745 - 35,819,886 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,185,479 - 36,218,631 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,185,360 - 36,218,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,011,091 - 36,044,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,196,837 - 36,229,992 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,704,314 - 36,739,341 (+)NCBIUU_Cfam_GSD_1.0
Fam193b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,770,762 - 122,802,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,798,347 - 1,813,164 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,795,669 - 1,827,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM193B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,396,371 - 80,430,071 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,396,371 - 80,430,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,859,341 - 81,890,913 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM193B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,530,685 - 79,567,667 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,530,172 - 79,559,701 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,723,112 - 10,759,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam193b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,551,274 - 12,567,785 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,535,844 - 12,569,162 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020673   ⟹   ENSCLAP00000020475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540829,758,629 - 29,774,099 (-)Ensembl
RefSeq Acc Id: XM_005376449   ⟹   XP_005376506
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005376451   ⟹   XP_005376508
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005376452   ⟹   XP_005376509
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005376455   ⟹   XP_005376512
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,787,275 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506562   ⟹   XP_013362016
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,114 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506567   ⟹   XP_013362021
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506571   ⟹   XP_013362025
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506572   ⟹   XP_013362026
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,115 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506577   ⟹   XP_013362031
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,781,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013506583   ⟹   XP_013362037
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,774,079 (-)NCBI
Sequence:
RefSeq Acc Id: XR_259726
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005376509   ⟸   XM_005376452
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376508   ⟸   XM_005376451
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376506   ⟸   XM_005376449
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005376512   ⟸   XM_005376455
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362025   ⟸   XM_013506571
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362026   ⟸   XM_013506572
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362016   ⟸   XM_013506562
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362021   ⟸   XM_013506567
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362031   ⟸   XM_013506577
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013362037   ⟸   XM_013506583
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VTM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020475   ⟸   ENSCLAT00000020673
Protein Domains
FAM193 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014031 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020673 ENTREZGENE
  ENSCLAT00000020673.1 UniProtKB/TrEMBL
InterPro FAM193 UniProtKB/TrEMBL
  FAM193_C UniProtKB/TrEMBL
NCBI Gene Fam193b ENTREZGENE
PANTHER PTHR15109 UniProtKB/TrEMBL
  PTHR15109:SF3 UniProtKB/TrEMBL
Pfam FAM193_C UniProtKB/TrEMBL
UniProt A0A8C2VTM2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Fam193b  family with sequence similarity 193 member B    family with sequence similarity 193, member B  Symbol and/or name change 5135510 APPROVED