Fgf1 (fibroblast growth factor 1) - Rat Genome Database

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Gene: Fgf1 (fibroblast growth factor 1) Chinchilla lanigera
Analyze
Symbol: Fgf1
Name: fibroblast growth factor 1
RGD ID: 8930334
Description: ENCODES a protein that exhibits fibroblast growth factor receptor binding (ortholog); growth factor activity (ortholog); heparin binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); branch elongation involved in ureteric bud branching (ortholog); cellular response to heat (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); cleft lip (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: fibroblast growth factor 1 (acidic)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,151,266 - 11,247,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Fgf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,151,266 - 11,247,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBIChiLan1.0ChiLan1.0
FGF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5142,592,178 - 142,698,070 (-)EnsemblGRCh38hg38GRCh38
GRCh385142,592,178 - 142,698,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375141,971,743 - 142,077,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,953,306 - 142,045,812 (-)NCBINCBI36hg18NCBI36
Build 345141,953,306 - 142,045,812NCBI
Celera5138,053,068 - 138,158,948 (-)NCBI
Cytogenetic Map5q31.3NCBI
HuRef5137,119,474 - 137,224,982 (-)NCBIHuRef
CHM1_15141,405,414 - 141,511,305 (-)NCBICHM1_1
Fgf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,971,725 - 39,062,532 (-)NCBIGRCm39mm39
GRCm39 Ensembl1838,971,726 - 39,062,525 (-)Ensembl
GRCm381838,838,672 - 38,929,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,838,673 - 38,929,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,998,327 - 39,078,353 (-)NCBIGRCm37mm9NCBIm37
MGSCv361838,965,154 - 39,044,673 (-)NCBImm8
Celera1840,186,840 - 40,265,902 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.74NCBI
Fgf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21830,686,555 - 30,772,667 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1830,686,581 - 30,772,357 (-)Ensembl
Rnor_6.01832,273,830 - 32,359,831 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1832,273,770 - 32,359,824 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,951,411 - 32,037,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41831,785,480 - 31,806,452 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11831,815,644 - 31,836,615 (-)NCBI
Celera1830,325,334 - 30,346,306 (-)NCBICelera
RH 3.4 Map18442.3RGD
Cytogenetic Map18p11NCBI
FGF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15144,056,387 - 144,161,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5144,056,387 - 144,078,001 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05137,949,100 - 138,054,553 (-)NCBIMhudiblu_PPA_v0panPan3
FGF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,467,431 - 37,554,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,470,985 - 37,554,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,520,400 - 34,607,331 (-)NCBI
ROS_Cfam_1.0237,924,029 - 38,010,951 (-)NCBI
UMICH_Zoey_3.1235,002,929 - 35,089,106 (-)NCBI
UNSW_CanFamBas_1.0235,815,172 - 35,902,044 (-)NCBI
UU_Cfam_GSD_1.0236,617,132 - 36,703,569 (-)NCBI
Fgf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,016,744 - 150,111,186 (+)NCBI
SpeTri2.0NW_00493650411,590,687 - 11,684,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2144,133,390 - 144,241,323 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12144,133,846 - 144,241,345 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22150,317,372 - 150,435,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12345,220,827 - 45,328,387 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2345,220,800 - 45,328,328 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603432,516,959 - 32,624,610 (+)NCBIVero_WHO_p1.0
Fgf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247741,779,168 - 1,867,321 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000014528   ⟹   ENSCLAP00000014370
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541511,151,266 - 11,247,344 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014529   ⟹   ENSCLAP00000014371
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541511,151,616 - 11,242,564 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014530   ⟹   ENSCLAP00000014372
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541511,198,831 - 11,247,344 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014531   ⟹   ENSCLAP00000014373
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541511,226,358 - 11,242,330 (+)Ensembl
RefSeq Acc Id: XM_005380699   ⟹   XP_005380756
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380701   ⟹   XP_005380758
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380702   ⟹   XP_005380759
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,219,324 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380703   ⟹   XP_005380760
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,213,603 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380707   ⟹   XP_005380764
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512345   ⟹   XP_013367799
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,151,330 - 11,192,446 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512346   ⟹   XP_013367800
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,186,603 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512347   ⟹   XP_013367801
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,160,129 - 11,245,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512348   ⟹   XP_013367802
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,198,831 - 11,245,554 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005380756   ⟸   XM_005380699
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005380764   ⟸   XM_005380707
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005380758   ⟸   XM_005380701
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005380760   ⟸   XM_005380703
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005380759   ⟸   XM_005380702
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013367799   ⟸   XM_013512345
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367801   ⟸   XM_013512347
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013367800   ⟸   XM_013512346
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013367802   ⟸   XM_013512348
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000014370   ⟸   ENSCLAT00000014528
RefSeq Acc Id: ENSCLAP00000014371   ⟸   ENSCLAT00000014529
RefSeq Acc Id: ENSCLAP00000014372   ⟸   ENSCLAT00000014530
RefSeq Acc Id: ENSCLAP00000014373   ⟸   ENSCLAT00000014531


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009907 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000014371 ENTREZGENE
  ENSCLAP00000014372 ENTREZGENE
Ensembl Transcript ENSCLAT00000014529 ENTREZGENE
  ENSCLAT00000014530 ENTREZGENE
NCBI Gene Fgf1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Fgf1  fibroblast growth factor 1    fibroblast growth factor 1 (acidic)  Symbol and/or name change 5135510 APPROVED